Publications
- Comparison of multiple modalities for drug response prediction with learning curves using neural networks and XGBoost
Branson N Cutillas PR Bessant C
Bioinformatics Advances, Oxford University Press (OUP) vol. 4 (1)
23-12-2023 - The bacterial replication origin BUS promotes nucleobase capture
Pelliciari S Bodet-Lefèvre S Fenyk S Stevens D Winterhalter C Schramm FD Pintar S Burnham DR et al.
Nature Communications, Springer Nature vol. 14 (1)
14-12-2023 - Insecticidal roof barriers mounted on untreated bed nets can be as effective against Anopheles gambiae as regular insecticide-treated bed nets
Abbott AJ Matope A Jones J Voloshin V Towers CE Towers D
Scientific Reports, Springer Nature vol. 13 (1)
12-12-2023 - Opportunities and challenges for deep learning in cell dynamics research
Chai B Efstathiou C Yue H
Trends in Cell Biology, Elsevier vol. 34 (11), 955-967.
28-11-2023 - Molecular diversity and evolution of far-red light-acclimated photosystem I
Gisriel CJ Bryant DA Brudvig GW Cardona T
Frontiers in Plant Science, Frontiers vol. 14
20-11-2023 - Emerging trends in functional genomics in Spiralia
Martín-Durán JM
Briefings in Functional Genomics, Oxford University Press (OUP) vol. 22 (6), 485-486.
17-11-2023 - Virtually Possible: Enhancing Quality Control of 3D-Printed Medicines with Machine Vision Trained on Photorealistic Images
Sun S Alkahtani ME Gaisford S
Pharmaceutics, Mdpi vol. 15 (11)
16-11-2023 - Electroactive Polymers for On‐Demand Drug Release
Alkahtani ME Elbadawi M Chapman CAR Green RA Gaisford S Orlu M Basit AW
Advanced Healthcare Materials, Wiley vol. 13 (3)
12-11-2023 - Does the definition of a novel environment affect the ability to detect cryptic genetic variation?
Riley CL Oostra V
Journal of Evolutionary Biology, Oxford University Press (OUP) vol. 36 (11), 1618-1629.
01-11-2023 - Aryl hydrocarbon receptor-interacting protein (aip) loss causes failure-to-thrive and cardiac defects in zebrafish
Wang X Haworth O Abdi-Aziz N Leggieri A Jhosadara E-FA Korbonits M Brennan CH
Endocrine Abstracts, Bioscientifica
31-10-2023 - Optimizing environmental sustainability in pharmaceutical 3D printing through machine learning
Li H E Alkahtani M W Basit A Gaisford S
International Journal of Pharmaceutics, Elsevier vol. 648
28-10-2023 - Correction: Islam, R.A.; Rallis, C. Ribosomal Biogenesis and Heterogeneity in Development, Disease, and Aging. Epigenomes 2023, 7, 17
Islam RA
Epigenomes, Mdpi vol. 7 (4)
26-10-2023 - Open access-enabled evaluation of epigenetic age acceleration in colorectal cancer and development of a classifier with diagnostic potential
Widayati TA Schneider J Panteleeva K Hrbkova N Voloshin V Chervova O
Frontiers in Genetics, Frontiers vol. 14
24-10-2023 - A Novel Sandwich Method for Serial Block Face SEM Imaging of Airway Multiciliated Epithelium
Morone N Martin MG Goggin P Czymmek KJ Mennella V Gonzalez JL
Methods in Molecular Biology, Springer Nature vol. 2725, 121-129.
20-10-2023 - Airway Cells 3D Reconstruction via Manual and Machine-Learning Aided Segmentation of Volume EM Datasets
Vijayakumaran A Abuammar A Medagedara O Narayan K Mennella V
Methods in Molecular Biology, Springer Nature vol. 2725, 131-146.
20-10-2023 - Proteomic profiling of centrosomes across multiple mammalian cell and tissue types by an affinity capture method
Carden S Vitiello E Rosa E Silva I Holder J Quarantotti V Kishore K Roamio Franklin VN D'Santos C et al.
Developmental Cell, Elsevier vol. 58 (21), 2393-2410.e9.
17-10-2023 - The PWWP domain and the evolution of unique DNA methylation toolkits in Hymenoptera
Kucharski R Ellis N Jurkowski TP Maleszka R
Iscience, Elsevier vol. 26 (11)
12-10-2023 - THU079 Danio Rerio (Zebrafish): A New Model Of AIP Loss Of Function
Wang X Leggieri A Anagianni S Brennan CH Korbonits M
Journal of The Endocrine Society, The Endocrine Society vol. 7 (Supplement_1)
05-10-2023 - Emerging trends in the study of spiralian larvae
Liang Y Carrillo‐Baltodano AM Martín‐Durán JM
Evolution & Development, Wiley vol. 26 (4)
03-10-2023 - Locations of membrane protein production in a cyanobacterium
Mahbub M
Journal of Bacteriology, American Society For Microbiology vol. 205 (10), e00209-e00223.
03-10-2023 - EXPLORING THE GENETICS OF NUMEROSITY, FROM FISH TO MAN
Brennan C Sheardown E Pérez JVT Petrazzini MEM Messina A Potrich D Anagianni S Perrino M et al.
Ibro Neuroscience Reports, Elsevier vol. 15
01-10-2023 - LOSS-OF-FUNCTION ZEBRAFISH (DANIO RERIO) FOR GENES ASSOCIATED WITH WILLIAMS SYNDROME SHOW ALTERED QUANTITY DISCRIMINATION
Pérez JVT Anagianni S Sheardown E Petrazzini MEM Fraser S Butterworth B Vallortigara G Brennan C
Ibro Neuroscience Reports, Elsevier vol. 15
01-10-2023 - Unveiling the atomic-scale transition between light harvesting and photoprotective states in plant photosynthesis
Ruban AV
Science China Chemistry, Springer Nature vol. 67 (5), 1375-1377.
25-09-2023 - Automated and reproducible cell identification in mass cytometry using neural networks
Saihi H Bessant C
Briefings in Bioinformatics, Oxford University Press (OUP) vol. 24 (6)
22-09-2023 - Photosynthesis under a red Sun: predicting the absorption characteristics of an extraterrestrial light-harvesting antenna
Duffy CDP Canchon G Haworth TJ Gillen E Chitnavis S Mullineaux CW
Monthly Notices of The Royal Astronomical Society, Oxford University Press (OUP) vol. 526 (2), 2265-2277.
18-09-2023 - Sensory neuron population expansion enhances odor tracking without sensitizing projection neurons
Takagi S Sancer G Abuin L Stupski SD Arguello JR Prieto-Godino LL Stern DL Cruchet S et al.
, Cold Spring Harbor Laboratory
15-09-2023 - Inferring Compensatory Kinase Networks in Yeast using Prolog
Elder GA Bessant C
Electronic Proceedings in Theoretical Computer Science, Open Publishing Association vol. 385, 260-273.
12-09-2023 - Unravelling the fluorescence kinetics of light-harvesting proteins with simulated measurements
Gray C Kailas L Adams PG Duffy CDP
Biochimica Et Biophysica Acta (Bba) - Bioenergetics, Elsevier vol. 1865 (1)
11-09-2023 - Constitutive methylation of budding yeast CENP-A contributes to chromosomal instability
Mishra PK Ali N Boeckmann L Takahashi Y Castineira P Thorpe P
Molecular Biology of the Cell. vol. 34 (2), 964-964.
01-09-2023 - The longevity and reversibility of quiescence in Schizosaccharomyces pombe are dependent upon the HIRA histone chaperone
Gal C Cochrane GA Morgan BA
Cell Cycle, Taylor & Francis vol. 22 (17), 1921-1936.
27-08-2023 - Gonadotropic activity of a second relaxin-type peptide in starfish
Mita M Feng Y Piñon-Gonzalez VM Elphick MR Katayama H
General and Comparative Endocrinology, Elsevier vol. 343, 114369-114369.
22-08-2023 - Higher-order cryo-EM structures of the full tetrameric type II topoisomerase with bound 18mer dsDNA
Najmudin S Pan X-S Beavil AJ Cronin NB Ilangovan A Fisher LM Sanderson MR
Acta Crystallographica Section a: Foundations and Advances, International Union of Crystallography (Iucr) vol. 79 (a2), c702-c702.
22-08-2023 - Ribosomal Biogenesis and Heterogeneity in Development, Disease, and Aging
Islam RA Rallis C
Epigenomes, Mdpi vol. 7 (3)
11-08-2023 - Functional genomics in Spiralia
Martín-Zamora FM Davies BE Donnellan RD Martín-Durán JM
Briefings in Functional Genomics, Oxford University Press (OUP) vol. 22 (6), 487-497.
09-08-2023 - A role for SETD2 loss in tumorigenesis through DNA methylation dysregulation
Javaid H Barberis A Chervova O Nassiri I Voloshin V Ogawa S Fairfax B Buffa F
Bmc Cancer, Springer Nature vol. 23 (1)
01-08-2023 - Genomics of Marine Larval Evolution and Development
Zakas C
Integrative and Comparative Biology, Oxford University Press (OUP) vol. 63 (5), 969-974.
01-08-2023 - Altered lipid acyl chain length controls energy dissipation in light-harvesting complex II proteoliposomes by hydrophobic mismatch
Li D-H Wilson S Mastroianni G Ruban AV
Journal of Photochemistry and Photobiology B Biology, Elsevier vol. 246
20-07-2023 - Phase separation on microtubules: from droplet formation to cellular function?
Volkov VA
Trends in Cell Biology, Elsevier vol. 34 (1), 18-30.
13-07-2023 - Rational Design of Covalent Multiheme Cytochrome‐Carbon Dot Biohybrids for Photoinduced Electron Transfer
Zhang H Casadevall C van Wonderen JH Su L Butt JN Reisner E Jeuken LJC
Advanced Functional Materials, Wiley vol. 33 (40)
13-07-2023 - Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Mishra PK Au W-C Castineira PG Ali N Stanton J Boeckmann L Takahashi Y Boone C et al.
Molecular Biology of The Cell, American Society For Cell Biology (Ascb) vol. 34 (10), ar99-ar99.
12-07-2023 - Ferredoxin C2 is required for chlorophyll biosynthesis and accumulation of photosynthetic antennae in Arabidopsis
Tournaire MD Scharff LB Kramer M Goss T Vuorijoki L Rodriguez‐Heredia M Wilson S Kruse I et al.
Plant Cell & Environment, Wiley vol. 46 (11), 3287-3304.
10-07-2023 - The Role of Crosslinker Content of Positively Charged NIPAM Nanogels on the In Vivo Toxicity in Zebrafish
Bilardo R Traldi F Brennan CH Resmini M
Pharmaceutics, Mdpi vol. 15 (7)
07-07-2023 - Author Correction: Symbioses shape feeding niches and diversification across insects
Cornwallis CK van ’t Padje A Ellers J Klein M Jackson R Kiers ET West SA Henry LM
Nature Ecology & Evolution, Springer Nature vol. 7 (7), 1153-1153.
01-07-2023 - A dynamic epibiont community associated with the bone-eating polychaete genus Osedax
Goffredi SK Panossian B Brzechffa C Field N King C Moggioli G Rouse GW Martín-Durán JM et al.
Mbio, American Society For Microbiology vol. 14 (4), e03140-e03122.
29-06-2023 - Constriction imposed by basement membrane regulates developmental cell migration
López EM Kabanova A Winkel A Franze K
Plos Biology, Public Library of Science (Plos) vol. 21 (6)
28-06-2023 - Community detection in empirical kinase networks identifies new potential members of signalling pathways
De Los Angeles Colomina Basanta C Bazzi M Hijazi M Bessant C Cutillas PR
Plos Computational Biology, Public Library of Science (Plos) vol. 19 (6)
23-06-2023 - B-cell-specific checkpoint molecules that regulate anti-tumour immunity
Bod L Kye Y-C Shi J Torlai Triglia E Schnell A Fessler J Ostrowski SM Von-Franque MY et al.
Nature, Springer Nature vol. 619 (7969), 348-356.
21-06-2023 - Digest: Habitat seasonality drives evolutionary change in plasticity in Bicyclus butterflies
van Bergen E Oostra V
Evolution, Oxford University Press (OUP) vol. 77 (8), 1910-1911.
10-06-2023 - CO51 Understanding the Lived Experience of Patients By Mining Online Health Boards
Bessant C Abdollahyan M
Value in Health, Elsevier vol. 26 (6), s23-s24.
01-06-2023 - Localization of relaxin-like gonad-stimulating peptide expression in starfish reveals the gonoducts as a source for its role as a regulator of spawning.
Feng Y Piñon Gonzalez VM Lin M Egertová M Mita M Elphick MR
J Comp Neurol
22-05-2023 - Stable kinetochore‐microtubule attachment requires loop‐dependent Ndc80‐Ndc80 binding
Polley S Müschenborn H Terbeck M De Antoni A Dogterom M Musacchio A
The Embo Journal, Springer Nature vol. 42 (13), e112504-e112504.
19-05-2023 - Symbioses shape feeding niches and diversification across insects
Cornwallis CK van ’t Padje A Ellers J Klein M Jackson R Kiers ET West SA Henry LM
Nature Ecology & Evolution, Springer Nature vol. 7 (7), 1022-1044.
18-05-2023 - Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms
Moggioli G Panossian B Sun Y Thiel D Martín-Zamora FM Tran M Clifford AM Goffredi SK et al.
Nature Communications, Springer Nature vol. 14 (1)
17-05-2023 - Author Correction: Structure and proteomic analysis of the crown-of-thorns starfish (Acanthaster sp.) radial nerve cord
Smith MK Rotgans BA Lang T Johnston R Wang T Suwansa-ard S Bose U Satoh N et al.
Scientific Reports, Springer Nature vol. 13 (1), 7650-7650.
11-05-2023 - Evidence of phylosymbiosis in Formica ants
Jackson R Patapiou PA Golding G Helanterä H Economou CK Chapuisat M Henry LM
Frontiers in Microbiology, Frontiers vol. 14
05-05-2023 - Overexpression of LHCSR and PsbS enhance light tolerance in Chlamydomonas reinhardtii
Wilson S Kim E Ishii A Ruban AV Minagawa J
Journal of Photochemistry and Photobiology B Biology, Elsevier vol. 244
03-05-2023 - Cannabinoid receptors in GtoPdb v.2023.1
Abood M Alexander SPH Barth F Bonner TI Bradshaw H Cabral G Casellas P Cravatt BF et al.
Iuphar/Bps Guide to Pharmacology Cite, University of Edinburgh vol. 2023 (1)
26-04-2023 - The DNA replication initiation protein DnaD recognises a specific strand of the Bacillus subtilis chromosome origin
Winterhalter C Pelliciari S Stevens D Fenyk S Marchand E Cronin NB Soultanas P Costa TRD et al.
Nucleic Acids Research, Oxford University Press (OUP) vol. 51 (9), 4322-4340.
24-04-2023 - Variation in density, immune gene suppression, and coinfection outcomes among strains of the aphid endosymbiont Regiella insecticola.
Goldstein EB de Anda Acosta Y Henry LM Parker BJ
Evolution, Oxford University Press (OUP) vol. 77 (7), 1704-1711.
24-04-2023 - Impacts of dual active-ingredient bed nets on the behavioural responses of pyrethroid resistant Anopheles gambiae determined by room-scale infrared video tracking
Gleave K Guy A Mechan F Murphy A Voloshin V Towers CE Ranson H
Malaria Journal, Springer Nature vol. 22 (1)
23-04-2023 - Imaging Amyloid‐β Membrane Interactions: Ion‐Channel Pores and Lipid‐Bilayer Permeability in Alzheimer's Disease
Viles JH
Angewandte Chemie, Wiley vol. 135 (25)
30-03-2023 - Finding a Husband: Using Explainable AI to Define Male Mosquito Flight Differences
Qureshi YM Voloshin V Facchinelli L McCall PJ Covington JA
Biology, Mdpi vol. 12 (4)
24-03-2023 - Author Correction: Multivalent interactions facilitate motor-dependent protein accumulation at growing microtubule plus-ends
Maan R Reese L Volkov VA King MR Evers WH Dogterom M
Nature Cell Biology, Springer Nature vol. 25 (4), 626-626.
15-03-2023 - The Evolution and Evolvability of Photosystem II
Oliver T Kim TD Trinugroho JP Cordón-Preciado V Wijayatilake N Bhatia A Rutherford AW Cardona T
Annual Review of Plant Biology, Annual Reviews vol. 74 (1), 225-257.
08-03-2023 - Deep learning techniques and mathematical modeling allow 3D analysis of mitotic spindle dynamics
Dang D Efstathiou C Sun D Draviam VM
Journal of Cell Biology, Rockefeller University Press vol. 222 (5)
02-03-2023 - Meeting reports
Cardona T Nixon P
The Biochemist, Portland Press vol. 45 (1), 39-39.
01-03-2023 - Structure and proteomic analysis of the crown-of-thorns starfish (Acanthaster sp.) radial nerve cord
Smith MK Rotgans BA Lang T Johnston R Wang T Suwansa-ard S Bose U Satoh N et al.
Scientific Reports, Springer Science and Business Media Llc vol. 13 (1)
27-02-2023 - Deriving Meaningful Aspects of Health Related to Physical Activity in Chronic Disease: Concept Elicitation Using Machine Learning–Assisted Coding of Online Patient Conversations
Byrom B Bessant C Smeraldi F Abdollahyan M Tahsin A
Value in Health, Elsevier vol. 26 (7), 1057-1066.
16-02-2023 - CSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side
van den Berg CM Volkov VA Schnorrenberg S Huang Z Frikstad K-AM Patzke S Dogterom M Akhmanova A
Journal of Cell Biology, Rockefeller University Press vol. 222 (4), e202208062-e202208062.
08-02-2023 - Interplays of AMPK and TOR in Autophagy Regulation in Yeast
Alao J-P Legon L Dabrowska A Tricolici A-M
Cells, Mdpi vol. 12 (4)
04-02-2023 - Deciphering the roles of cell shape and Fat and Dachsous planar polarity in arranging the Drosophila apical microtubule network through quantitative image analysis
Ramírez-Moreno M Hunton R Strutt D
Molecular Biology of The Cell, American Society For Cell Biology (Ascb) vol. 34 (6), ar55-ar55.
03-02-2023 - Annelid functional genomics reveal the origins of bilaterian life cycles
Martín-Zamora FM Liang Y Guynes K Carrillo-Baltodano AM Davies BE Donnellan RD Tan Y Moggioli G et al.
Nature, Springer Nature vol. 615 (7950), 105-110.
25-01-2023 - Immunohistochemical localisation of vasopressin/oxytocin-type, corazonin-type and luqin-type neuropeptide expression in the starfish Asterias rubens using antibodies to the C-terminal region of precursor proteins
Tinoco AB Egertová M Elphick MR
Cell and Tissue Research, Springer Science and Business Media Llc
19-01-2023 - Leukocyte telomere length and mitochondrial DNA copy number association with colorectal cancer risk in an aging population
Malyutina S Maximov V Chervova O Orlov P Voevoda M
Global Translational Medicine, Accscience Publishing vol. 2 (1), 184-184.
10-01-2023 - Structural basis for ubiquitylation by HOIL-1
Wu Q Koliopoulos MG Stieglitz B
Frontiers in Molecular Biosciences, Frontiers vol. 9
06-01-2023 - Photosynthetic Life Origin, Evolution, and Future
Murphy DJ Cardona T
01-01-2023