Publications
- βcatenin-1 localization and transcriptomic profiling provide insights into the early development of planarians
Coronel-Córdoba P Sureda-Gómez M Martín-Durán JM Monjo F Saló E Abril JF Adell T
Bmc Biology, Springer Nature vol. 23 (1)
29-12-2025 - A high-quality draft genome assembly of the Neotropical butterfly, Batesia hypochlora (Nymphalidae: Biblidinae)
Pham NT Duplouy A See J Knowles LS Marquina E Gallice G Molleman F Oostra V
Bmc Genomics, Springer Nature vol. 27 (1)
06-12-2025 - Extracellular vesicle-linked vitamin B12 acquisition via novel binding proteins in Bacteroides thetaiotaomicron
Juodeikis R Ulrich R Clarke C Banasik M Deery E Saalbach G Kräutler B Carding SR et al.
Biochemical Journal, Portland Press vol. 482 (23), 1793-1812.
05-12-2025 - The genetic and biochemical basis of human leading strand synthesis
Agnarelli A Buckley-Benbow L Ozgencil M Lad M Ampah KK Kalinka A Belan O Maslen S et al.
Nature Communications, Springer Nature vol. 17 (1)
04-12-2025 - The CIP2A-TOPBP1 axis facilitates mitotic DNA repair via MiDAS and MMEJ
Martin PR Nieminuszczy J Kozik Z Jakub N Kowalski S Lecot M Vorhauser J Lane KA et al.
Nature Communications, Springer Nature vol. 16 (1)
27-11-2025 - Artificial cells evidence apical compressive forces building up during neuroepithelial organoid early development
Kanso H Di Cio S Rose R Palacios I Gautrot JE
Biomaterials, Elsevier vol. 328
24-11-2025 - Excimer and non-photochemical quenching in LHCII
Zou J-W Li D-H Gao R-Y Li Y-Q Yu Q-R Yu Z-H Ruban AV Zhang J-P et al.
The Journal of Chemical Physics, Aip Publishing vol. 163 (19)
21-11-2025 - Functional characterization of neuropeptides that act as ligands for both calcitonin-type and pigment-dispersing factor-type receptors in a deuterostome
Cong X Liu H Liu L Castelán NE Jones KG Egertová M Elphick MR Chen M
Elife, Elife vol. 13
21-11-2025 - rbfox1 LoF mutants show disrupted bdnf/trkb2 and crhb/nr3c2 expression and increased cortisol levels during development coupled with signs of allostatic overload in adulthood
Leggieri A García-González J Hosseinian S Ashdown P Anagianni S Wang X Havelange W Fernàndez-Castillo N et al.
Translational Psychiatry, Springer Nature vol. 15 (1)
19-11-2025 - Heterogeneity in responses to ribosome-targeting antibiotics mediated by bacterial RNA repair
Hindley HJ Gong Z Moradian S Giuliano MG Sapelkin A Kotta-Loizou I Buck M Engl C et al.
Nature Communications, Springer Nature vol. 16 (1)
11-11-2025 - OR25-07 A Novel and Severe Multisystem Metabolic Disease due to Homozygous AIP Variants
Korbonits M Wang X Barry S Suleyman O Stefano DT Uddin N Hall CL Laura P et al.
Journal of The Endocrine Society, The Endocrine Society vol. 9 (Supplement_1)
22-10-2025 - Advances in selective targeting of serine hydrolases: A targeted covalent approach against hCES2A mitigates irinotecan toxicity in vivo
De Vita E
Acta Pharmaceutica Sinica B, Elsevier vol. 15 (10), 5491-5492.
01-10-2025 - Lack of Williams syndrome-associated genes alters quantity discrimination in zebrafish
Torres-Pérez JV Anagianni S Sheardown E Miletto-Petrazzini ME Fraser SE Butterworth B Vallortigara G Brennan CH
Behavioural Brain Research, Elsevier vol. 496
01-10-2025 - Rapalink-1 reveals TOR-dependent genes and an agmatinergic axis-based metabolic feedback regulating TOR activity and lifespan in fission yeast
Kumar J Ng K Rallis C
Communications Biology, Springer Nature vol. 8 (1)
29-09-2025 - Cell fate specification modes shape transcriptome evolution in the highly conserved spiral cleavage
Liang Y Wei J Kang Y Carrillo-Baltodano AM Martín-Durán JM
Embo Reports, Springer Nature vol. 26 (20), 5088-5114.
04-09-2025 - Dietary niche shapes bacterial community in Indo-Pacific ants
Cunningham P Vesey R Chaudry-Phipps H Fayle TM Diara U Chomicki G Lestina D Tuma J et al.
Microbiology Spectrum, American Society For Microbiology vol. 13 (10), e01965-e01925.
03-09-2025 - Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments
Hilali SE Dru P Le Moan A Li YI Huynen MA Hoelz A Robinson RC Martín-Durán JM et al.
Bmc Biology, Springer Nature vol. 23 (1)
02-09-2025 - Borrowing treasures from neighbors: In-context learning for multimodal learning with missing modalities and data scarcity
Zhi Z Liu Z Elbadawi M Daneshmend A Orlu M Basit A Demosthenous A Rodrigues M
Neurocomputing, Elsevier vol. 647
01-09-2025 - Amyloid-β oligomers, curvilinear and annular assemblies, imaged by cryo-ET, cryo-EM, and AFM
Liang R Khursheed A Tahirbegi B Torres-Flores AP Qi S Tian Y Zhang H Szwedziak P et al.
Science Advances, American Association For The Advancement of Science (Aaas) vol. 11 (35)
27-08-2025 - Zebrafish exposed to a cocktail of pesticides during early development display long-lasting neurobehavioral alterations
Abellán-Álvaro M Forner-Piquer I Chousidis I Godden E García-Deante A Marchi N Brennan CH Torres-Pérez JV
Archives of Toxicology, Springer Nature vol. 99 (10), 4181-4195.
25-08-2025 - Centromere protection requires strict mitotic inactivation of the Bloom syndrome helicase complex
Fernández-Casañas M Karanika E Aliyaskarova U Olukoga T Herbert AD Oliver AW Day M Crncec A et al.
Nature Communications, Springer Nature vol. 16 (1)
22-08-2025 - A comparison of 27 Arabidopsis thaliana genomes and the path toward an unbiased characterization of genetic polymorphism
Igolkina AA Vorbrugg S Rabanal FA Liu H-J Ashkenazy H Kornienko AE Fitz J Collenberg M et al.
Nature Genetics, Springer Nature vol. 57 (9), 2289-2301.
19-08-2025 - The genomic origin of the unique chaetognath body plan
Piovani L Gavriouchkina D Parey E Sarre LA Peijnenburg KTCA Martín-Durán JM Rokhsar DS Satoh N et al.
Nature, Springer Nature vol. 645 (8082), 964-973.
13-08-2025 - Fluorescence recovery in the super-resolution regime reveals subcompartments of 53BP1 foci
Wu C Manjarrez-González JC Choudhury M Shamkhi N Ding S Nair VM Draviam VM
Cell Reports Methods, Elsevier vol. 5 (8)
01-08-2025 - Machine Learning Predicts Drug Release Profiles and Kinetic Parameters Based on Tablets’ Formulations
Protopapa C Siamidi A Eneli AA Elbadawi M Vlachou M
The Aaps Journal, Springer Nature vol. 27 (5)
28-07-2025 - Plasticity in climate change responses
Stollewerk A Kratina P Sentis A Chaparro‐Pedraza C Decaestecker E De Meester L Eyice O Govaert L et al.
Biological Reviews, Wiley vol. 100 (6), 2508-2527.
23-07-2025 - E-cadherin endocytosis promotes non-canonical EGFR:STAT signalling to induce cell death and inhibit heterochromatinisation
Ramirez Moreno M Quinton A Jacobsen E Stempor PA Zeidler MP Bulgakova NA
Plos Genetics, Public Library of Science (Plos) vol. 21 (7)
21-07-2025 - Non-linear frequency doubling up-conversion of geothermal radiation cannot provide sufficient light to support oxygenic photosynthesis at deep-sea hydrothermal vents
Mullineaux CW Duffy CDP
National Science Review, Oxford University Press (OUP) vol. 12 (9)
18-07-2025 - Direct genetic transformation bypasses tumor-associated DNA methylation alterations
Hetzel S Hodis E Torlai Triglia E Kovacsovics A Steinmann K Gnirke A Cui M McQuaid D et al.
Genome Biology, Springer Nature vol. 26 (1)
17-07-2025 - The chromosomal genome sequence of the fan worm Protula sp. (Serpulidae, Sabellida)
Sun Y Qiu J-W Martín-Durán JM Oatley G Sinclair E Aunin E Gettle N Santos C et al.
Wellcome Open Research, F1000research vol. 10
14-07-2025 - Beyond movement: the dynamic roles of Type IV pili in cyanobacterial life.
Hammerl J Schuergers N Enomoto G Mullineaux CW Wilde A
Journal of Bacteriology, American Society For Microbiology, e0008625-e0008625.
03-07-2025 - The human RIF1-Long isoform interacts with BRCA1 to promote recombinational fork repair under DNA replication stress
Dong Q Day M Saito Y Parker E Watts LP Kanemaki MT Oliver AW Pearl LH et al.
Nature Communications, Springer Nature vol. 16 (1)
01-07-2025 - Understanding the sources of performance in deep drug response models reveals insights and improvements
Branson N Cutillas PR Bessant C
Bioinformatics, Oxford University Press (OUP) vol. 41 (Supplement_1), i142-i149.
01-07-2025 - Dissecting the cell cycle regulation, DNA damage sensitivity and lifespan effects of caffeine in fission yeast
Alao J-P Kumar J Stamataki D Rallis C
Microbial Cell, Shared Science Publishers Og vol. 12 (1)
24-06-2025 - The RRM domain-containing protein Rbp3 interacts with ribosomes and the 3' ends of mRNAs encoding photosynthesis proteins.
Hemm L Lichtenberg E Tholen S Reimann V Kakazu K Machida S Mahbub M Schilling O et al.
Proceedings of The National Academy of Sciences of The United States of America vol. 122 (26), e2506275122-e2506275122.
24-06-2025 - Cell cycle dependent methylation of Dam1 contributes to kinetochore integrity and faithful chromosome segregation
Mishra PK Au W-C Choy JS Castineira PG Khawar A Tessier C Das S Thorkell A et al.
Plos Genetics, Public Library of Science (Plos) vol. 21 (6)
16-06-2025 - A dynamic histone-based chromatin regulatory toolkit underpins genome and developmental evolution in an invertebrate clade
Martín-Zamora FM Cole J Donnellan RD Guynes K Carrillo-Baltodano AM Dickman MJ Hurd PJ Martín-Durán JM
Genome Biology, Springer Nature vol. 26 (1)
10-06-2025 - ANKHD1 promotes pathogenic proliferation in Autosomal Dominant Polycystic Kidney Disease via the Cyclin D1/CDK4 pathway
Terzenidou M-E Patera F Macleod FM Ong ACM Fragiadaki M
Journal of Translational Medicine, Springer Nature vol. 23 (1)
02-06-2025 - The chromosomal genome sequence of the marine leech, Branchellion lobata Moore, 1952 and its associated microbial metagenome sequences
Goffredi SK Appy R Martín-Durán JM Oatley G Sinclair E Aunin E Gettle N Santos C et al.
Wellcome Open Research, F1000research vol. 10
02-06-2025 - Evolution of temperature preference behaviour among Drosophila larvae
Kafle T Grub M Sakagiannis P Nawrot MP Arguello JR
Iscience, Elsevier vol. 28 (7)
31-05-2025 - Biodiversity2Drugs—Renaissance of exploring nature‐derived peptides for GPCR ligand discovery
Gruber CW Beets I Boudreault P da S. Bolzani V Carlsson J Fernandes PA Freissmuth M Gilles N et al.
British Journal of Pharmacology, Wiley vol. 182 (16), 3691-3694.
29-05-2025 - Microtubule dynamics are defined by conformations and stability of clustered protofilaments
Kalutskii M Grubmüller H Volkov VA Igaev M
Proceedings of The National Academy of Sciences of The United States of America, Proceedings of The National Academy of Sciences vol. 122 (22)
29-05-2025 - Cryo-EM Structure of the relaxosome, a complex essential for bacterial mating and the spread of antibiotic resistance genes
Williams SM Raffl S Kienesberger S Ilangovan A Zechner EL Waksman G
Nature Communications, Springer Nature vol. 16 (1)
27-05-2025 - Housing and husbandry factors affecting zebrafish novel tank test responses: a global multi-laboratory study
Hillman C Fontana BD Amstislavskaya TG Gorbunova MA Altenhofen S Barthelson K Bastos LM Borba JV et al.
Lab Animal, Springer Nature vol. 54 (6), 156-164.
26-05-2025 - Interpreting Time-Series Machine Learning Models through Domain-Informed Basis Functions
Qureshi Y Voloshin V McCall PJ Covington J Towers C Towers D
2025 10th International Conference on Machine Learning Technologies (ICMLT). vol. 00, 42-46.
25-05-2025 - Mesoscale regulation of microtubule-organizing centers by the E3 ligase TRIM37
Yeow ZY Sarju S Chang F-C Xu LY van Breugel M Holland AJ
Nature Structural & Molecular Biology, Springer Nature vol. 32 (9), 1787-1799.
25-05-2025 - Structure and evolution of photosystem I in the early-branching cyanobacterium Anthocerotibacter panamensis
Jiang H-W Gisriel CJ Cardona T Flesher DA Brudvig GW Ho M-Y
Proceedings of The National Academy of Sciences of The United States of America, Proceedings of The National Academy of Sciences vol. 122 (20)
14-05-2025 - AIP deficiency in zebrafish causes loss of intestinal epithelial differentiation via disrupted wnt signaling
Wang X Haworth O Barry S Leggieri A Hall C Martin J Korbonits M Brennan C
Endocrine Abstracts, Bioscientifica
09-05-2025 - Exploring the Structural Diversity and Evolution of the D1 Subunit of Photosystem II Using AlphaFold and Foldtree
Kim TD Pretorius D Murray JW Cardona T
Physiologia Plantarum, Wiley vol. 177 (3)
01-05-2025 - Cannabinoid receptors in GtoPdb v.2025.1
Abood M Felder CC Greasley P Herkenham M Howlett AC Kunos G Mackie K Mechoulam R et al.
Iuphar/Bps Guide to Pharmacology Cite, University of Edinburgh vol. 2025 (1)
01-04-2025 - The conserved Spd-2/CEP192 domain adopts a unique protein fold to promote centrosome scaffold assembly
Hu L Wainman A Andreeva A Apizi M Alvarez-Rodrigo I Wong S-S Saurya S Sheppard D et al.
Science Advances, American Association For The Advancement of Science (Aaas) vol. 11 (12)
19-03-2025 - Author Correction: B-cell-specific checkpoint molecules that regulate anti-tumour immunity
Bod L Kye Y-C Shi J Torlai Triglia E Schnell A Fessler J Ostrowski SM Von-Franque MY et al.
Nature, Springer Nature vol. 640 (8057), e1-e1.
17-03-2025 - Fundamental questions in meiofauna research highlight how small but ubiquitous animals can improve our understanding of Nature
Martínez A Bonaglia S Di Domenico M Fonseca G Ingels J Jörger KM Laumer C Leasi F et al.
Communications Biology, Springer Nature vol. 8 (1)
17-03-2025 - Predicting the diversity of photosynthetic light-harvesting using thermodynamics and machine learning
Gray C Chitnavis S Buja T Duffy CDP
Plos Computational Biology, Public Library of Science (Plos) vol. 21 (3)
11-03-2025 - Bio‐Inspired Self‐Assembly of Enzyme‐Micelle Systems for Semi‐Artificial Photosynthesis
Liu Y Rodríguez‐Jiménez S Song H Pannwitz A Kim D Coito AM Manuel RR Webb S et al.
Angewandte Chemie International Edition, Wiley vol. 64 (18)
03-03-2025 - The phosphate of life
De Vita E Page R
Nature Chemistry, Springer Nature vol. 17 (3), 460-460.
01-03-2025 - The p3 peptides (Aβ17-40/42) rapidly form amyloid fibrils that cross-seed with full-length Aβ
Tian Y Torres-Flores AP Shang Q Zhang H Khursheed A
Nature Communications, Springer Nature vol. 16 (1)
27-02-2025 - Discrimination of inherent characteristics of susceptible and resistant strains of Anopheles gambiae by explainable artificial intelligence analysis of flight trajectories
Qureshi YM Voloshin V Ranson H McCall PJ Towers CE
Scientific Reports, Springer Nature vol. 15 (1)
25-02-2025 - Receptor deorphanization in starfish reveals the evolution of relaxin signaling as a regulator of reproduction
Feng Y Escudero Castelán N Hossain MA Wu H Katayama H Smith SJ Cummins SF Mita M et al.
Bmc Biology, Springer Nature vol. 23 (1)
25-02-2025 - Discovery and functional characterization of a bombesin-type neuropeptide signaling system in an invertebrate
Huang W ZHONG X Zampronio C Bottrill A Jones K Tinoco A Guo L Egertová M et al.
Proceedings of The National Academy of Sciences, National Academy of Sciences
19-02-2025 - Advancing antibiotic discovery with bacterial cytological profiling: a high-throughput solution to antimicrobial resistance
Salgado J Rayner J
Frontiers in Microbiology, Frontiers vol. 16
13-02-2025 - Defensive Symbiont Genotype Distributions Are Linked to Parasitoid Attack Networks
Wu T Rodrigues AA Fayle TM Henry LM
Ecology Letters, Wiley vol. 28 (2)
01-02-2025 - Repression of CADM1 transcription by HPV type 18 is mediated by three-dimensional rearrangement of promoter-enhancer interactions
Plos Pathogens, Public Library of Science (Plos) vol. 21 (1)
27-01-2025 - Centriolar cap proteins CP110 and CPAP control slow elongation of microtubule plus ends
Iyer SS Chen F Ogunmolu FE Moradi S Volkov VA van Grinsven EJ van Hoorn C Wu J et al.
Journal of Cell Biology, Rockefeller University Press vol. 224 (3)
23-01-2025 - Multi-SpinX: An advanced framework for automated tracking of mitotic spindles and kinetochores in multicellular environments
Chai B Efstathiou C Choudhury MS Kuniyasu K Sanjay Jain S Maharea A-C Tanaka K Draviam VM
Computers in Biology and Medicine, Elsevier vol. 186, 109626-109626.
22-01-2025 - Preservation and early evolution of scalidophoran ventral nerve cord
Wang D Vannier J Martín-Durán JM
Science Advances, American Association For The Advancement of Science (Aaas) vol. 11 (2)
10-01-2025 - Chromosome-level genome assembly and methylome profile yield insights for the conservation of endangered loggerhead sea turtles
Yen EC Gilbert JD Balard A Taxonera A Fairweather K Ford HL Thorburn D-MJ Rossiter SJ et al.
Gigascience, Oxford University Press (OUP) vol. 14
06-01-2025 - Adapting gas fermenting bacteria for light-driven domino valorization of CO 2
Su L Rodríguez-Jiménez S Short MIM Reisner E
Chemical Science, Royal Society of Chemistry (Rsc) vol. 16 (26), 11801-11808.
01-01-2025 - Machine learning reveals immediate disruption in mosquito flight when exposed to Olyset nets
Qureshi YM Voloshin V Guy A Ranson H McCall PJ Covington JA Towers CE Towers DP
Current Research in Parasitology and Vector-Borne Diseases, Elsevier vol. 7
01-01-2025 - Reassessing the role and lifetime of Q x in the energy transfer dynamics of chlorophyll a
Keil E Kumar A Bäuml L Reiter S Thyrhaug E Moser S Duffy CDP de Vivie-Riedle R et al.
Chemical Science, Royal Society of Chemistry (Rsc) vol. 16 (4), 1684-1695.
01-01-2025