Publications

Publications of specific relevance to the Centre for Biodiversity and Sustainability
2026
On the use of generative models for demographic inference in malaria vectors from genomic dataEneli AA Siu PC Perez MF Burt A Fumagalli M Mathieson S
G3: Genes, Genomes, Genetics,
Oxford University Press (OUP) 14-05-2026
Identifying Adaptive Footprints in the Presence of Demographic UncertaintyArnab SP Khan M dos Santos ALC Fumagalli M DeGiorgio M
Genome Biology and Evolution,
Oxford University Press (OUP) vol. 18 (4)
24-03-2026
AI solutions for evolutionary genomics of nonmodel speciesDeGiorgio M Arnab SP Fumagalli M
Evolution Letters,
Oxford University Press (OUP) vol. 10 (2), 135-146.
03-03-2026
Positive Selection Targeted Primate Genes that Encode Transposable Element RepressorsCagliani R Forni D Mozzi A Sarama R Pozzoli U Fumagalli M Sironi M
Genome Biology and Evolution,
Oxford University Press (OUP) vol. 18 (3)
02-03-2026
Burn Selection: How Fire Injury Shaped Human EvolutionCuddihy J Li Y Fisher I Takats Z Friston D Collins D Vizcaychipi M Fumagalli M et al.
Bioessays,
Wiley vol. 48 (2)
01-02-20262025
Reimagining human population genetics in the age of Artificial Intelligence.Mas-Sandoval A Fumagalli M
Journal of Anthropological Sciences = Rivista Di Antropologia : Jass vol. 103, 213-216.
22-12-2025
The importance of small-island populations for the long-term survival of endangered large-bodied insular mammalsAninta SG Drinkwater R Carmagnini A Deere NJ Priyono DS Andayani N Winarni NL Supriatna J et al.
Proceedings of The National Academy of Sciences of The United States of America,
Proceedings of The National Academy of Sciences vol. 122 (26)
24-06-2025
Efficient Detection and Characterization of Targets of Natural Selection Using Transfer LearningArnab SP dos Santos ALC Fumagalli M DeGiorgio M
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 42 (5)
30-04-2025
859 The Selection Through Burn Injury Hypothesis: How Burn Injuries Shaped Human EvolutionCuddihy J Li Y Fumagalli M Vizcaychipi M Collins D Friston D Nagy I
Journal of Burn Care & Research,
Oxford University Press (OUP) vol. 46 (Supplement_1), s298-s298.
01-04-2025
How the analysis of the distribution of fitness effects can reveal novel insights onto the genetics of domesticationFumagalli M
Peer Community in Evolutionary Biology,
Peer Community In vol. 1
15-03-2025
Efficient detection and characterization of targets of natural selection using transfer learningArnab SP dos Santos ALC Fumagalli M DeGiorgio M
,
Cold Spring Harbor Laboratory 07-03-20252024
*fastmixture* generates fast and accurate estimates of global ancestry proportions and ancestral allele frequenciesFumagalli M
Peer Community in Evolutionary Biology,
Peer Community In vol. 1
18-11-2024
Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta CoalescentKorfmann K Sellinger TPP Freund F Fumagalli M Tellier A
Peer Community Journal,
Peer Community In vol. 4
18-03-2024
Discerning the causes of local deviations in genetic variation: the effect of low-recombination regionsFumagalli M
Peer Community in Evolutionary Biology,
Peer Community In vol. 1
14-02-20242023
The genomic footprint of social stratification in admixing American populationsMas-Sandoval A Mathieson S Fumagalli M
Elife,
Elife vol. 12
01-12-2023
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language.Mas-Sandoval A Jin C Fracassetti M Fumagalli M
F1000research vol. 11, 126-126.
14-07-2023
Deep Learning in Population GeneticsKorfmann K Gaggiotti OE Fumagalli M
Genome Biology and Evolution,
Oxford University Press (OUP) vol. 15 (2)
23-01-2023
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia languageMas-Sandoval A Jin C Fracassetti M Fumagalli M
In
F1000res 01-01-20232022
HMMploidy: inference of ploidy levels from short-read sequencing dataSoraggi S Rhodes J Altinkaya I Tarrant O Balloux F Fisher MC Fumagalli M
Peer Community Journal,
Peer Community In vol. 2
14-10-2022
Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing dataMas-Sandoval A Pope NS Nielsen KN Altinkaya I Fumagalli M Korneliussen TS
Gigascience vol. 11
17-05-2022
Disentangling Signatures of Selection before and after European Colonization in Latin AmericansMendoza-Revilla J Chacón-Duque JC Fuentes-Guajardo M Ormond L Wang K Hurtado M Villegas V Granja V et al.
Molecular Biology and Evolution vol. 39 (4)
19-04-20222021
Determinants of population genetic structure in co-occurring freshwater snailsBilde T Fumagalli M
Peer Community in Evolutionary Biology,
Peer Community In vol. 1
01-09-2021
An efficient implementation of legofit software to infer demographic histories from population genetic dataFumagalli M
Peer Community in Mathematical and Computational Biology,
Peer Community In vol. 1
26-05-2021
Detecting adaptive introgression in human evolution using convolutional neural networksGower G Picazo PI Fumagalli M Racimo F
Elife,
Elife vol. 10
25-05-2021
Distinguishing between recent balancing selection and incomplete sweep using deep neural networksIsildak U Stella A Fumagalli M
Molecular Ecology Resources,
Wiley vol. 21 (8), 2706-2718.
05-04-20212020
Detecting loci under natural selection from temporal genomic data of selfing populationsFumagalli M
Peer Community in Evolutionary Biology,
Peer Community In 26-10-2020
Inference of natural selection from ancient DNADehasque M Ávila‐Arcos MC Díez‐del‐Molino D Fumagalli M Guschanski K Lorenzen ED Malaspinas A Marques‐Bonet T et al.
Evolution Letters,
Oxford University Press (OUP) vol. 4 (2), 94-108.
01-04-20202019
ImaGene: a convolutional neural network to quantify natural selection from genomic dataTorada L Lorenzon L Beddis A Isildak U Pattini L Mathieson S Fumagalli M
Bmc Bioinformatics,
Springer Nature vol. 20 (Suppl 9)
01-11-2019
Genetic diversity of CHC22 clathrin impacts its function in glucose metabolismFumagalli M Camus SM Diekmann Y Burke A Camus MD Norman PJ Joseph A Abi-Rached L et al.
Elife,
Elife vol. 8
04-06-2019
Phenotypic sexual dimorphism is associated with genomic signatures of resolved sexual conflictWright AE Rogers TF Fumagalli M Cooney CR Mank JE
Molecular Ecology,
Wiley vol. 28 (11), 2860-2871.
01-06-2019
ngsLD: evaluating linkage disequilibrium using genotype likelihoodsFox EA Wright AE Fumagalli M Vieira FG
Bioinformatics,
Oxford University Press (OUP) vol. 35 (19), 3855-3856.
23-03-2019
A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in EurasiaAdhikari K Mendoza-Revilla J Sohail A Fuentes-Guajardo M Lampert J Chacón-Duque JC Hurtado M Villegas V et al.
Nature Communications,
Springer Nature vol. 10 (1)
21-01-20192018
Recent Asian origin of chytrid fungi causing global amphibian declinesO'Hanlon SJ Rieux A Farrer RA Rosa GM Waldman B Bataille A Kosch TA Murray KA et al.
Science,
American Association For The Advancement of Science (Aaas) vol. 360 (6389), 621-627.
11-05-2018
Male‐biased gene expression resolves sexual conflict through the evolution of sex‐specific genetic architectureWright AE Fumagalli M Cooney CR Bloch NI Vieira FG Buechel SD Kolm N Mank JE
Evolution Letters,
Oxford University Press (OUP) vol. 2 (2), 52-61.
01-04-2018
Genome-wide analyses of the Bemisia tabaci species complex reveal contrasting patterns of admixture and complex demographic historiesElfekih S Etter P Tay WT Fumagalli M Gordon K Johnson E De Barro P
Plos One,
Public Library of Science (Plos) vol. 13 (1)
24-01-20182017
Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to dietLassalle F Spagnoletti M Fumagalli M Shaw L Dyble M Walker C Thomas MG Migliano AB et al.
Molecular Ecology,
Wiley vol. 27 (1), 182-195.
14-12-2017
Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglersBenazzo A Trucchi E Cahill JA Delser PM Mona S Fumagalli M Bunnefeld L Cornetti L et al.
Proceedings of The National Academy of Sciences of The United States of America,
Proceedings of The National Academy of Sciences vol. 114 (45), e9589-e9597.
24-10-2017
Natural Selection Associated With Infectious DiseasesFumagalli M Balloux F
In
On Human Nature Biology Psychology Ethics Politics and Religion 177-191.
01-01-2017
Chapter 11 Natural Selection Associated With Infectious DiseasesFumagalli M Balloux F
In
On Human Nature,
Elsevier 177-191.
01-01-20172016
Archaic Adaptive Introgression in TBX15/WARS2Racimo F Gokhman D Fumagalli M Ko A Hansen T Moltke I Albrechtsen A Carmel L et al.
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 34 (3), 509-524.
21-12-2016
Genome-culture coevolution promotes rapid divergence of killer whale ecotypesFoote AD Vijay N Ávila-Arcos MC Baird RW Durban JW Fumagalli M Gibbs RA Hanson MB et al.
Nature Communications,
Springer Nature vol. 7 (1)
31-05-20162015
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environmentsLibrado P Der Sarkissian C Ermini L Schubert M Jónsson H Albrechtsen A Fumagalli M Yang MA et al.
Proceedings of The National Academy of Sciences of The United States of America,
Proceedings of The National Academy of Sciences vol. 112 (50), e6889-e6897.
23-11-2015
Evolutionary Genomics and Conservation of the Endangered Przewalski’s HorseDer Sarkissian C Ermini L Schubert M Yang MA Librado P Fumagalli M Jónsson H Bar-Gal GK et al.
Current Biology,
Elsevier vol. 25 (19), 2577-2583.
24-09-2015
Greenlandic Inuit show genetic signatures of diet and climate adaptationFumagalli M Moltke I Grarup N Racimo F Bjerregaard P Jørgensen ME Korneliussen TS Gerbault P et al.
Science,
American Association For The Advancement of Science (Aaas) vol. 349 (6254), 1343-1347.
18-09-2015
Improving the estimation of genetic distances from Next-Generation Sequencing dataVieira FG Lassalle F Korneliussen TS Fumagalli M
Biological Journal of The Linnean Society,
Oxford University Press (OUP) vol. 117 (1), 139-149.
30-03-2015
Human pathogen-driven evolutionFumagalli M
The Biomedical & Life Sciences Collection,
Henry Stewart Talks vol. 2015 (3)
18-03-2015
Erratum: The origin and evolution of maize in the Southwestern United Statesda Fonseca RR Smith BD Wales N Cappellini E Skoglund P Fumagalli M Samaniego JA Carøe C et al.
Nature Plants,
Springer Nature vol. 1 (1)
14-01-2015
The origin and evolution of maize in the Southwestern United Statesda Fonseca RR Smith BD Wales N Cappellini E Skoglund P Fumagalli M Samaniego JA Carøe C et al.
Nature Plants,
Springer Nature vol. 1 (1)
08-01-20152014
Uncovering the Genetic History of the Present-Day Greenlandic PopulationMoltke I Fumagalli M Korneliussen TS Crawford JE Bjerregaard P Jørgensen ME Grarup N Gulløv HC et al.
American Journal of Human Genetics,
Elsevier vol. 96 (1), 54-69.
31-12-2014
Prehistoric genomes reveal the genetic foundation and cost of horse domesticationSchubert M Jónsson H Chang D Der Sarkissian C Ermini L Ginolhac A Albrechtsen A Dupanloup I et al.
Proceedings of The National Academy of Sciences of The United States of America,
Proceedings of The National Academy of Sciences vol. 111 (52), e5661-e5669.
15-12-2014
Speciation with gene flow in equids despite extensive chromosomal plasticityJónsson H Schubert M Seguin-Orlando A Ginolhac A Petersen L Fumagalli M Albrechtsen A Petersen B et al.
Proceedings of The National Academy of Sciences of The United States of America,
Proceedings of The National Academy of Sciences vol. 111 (52), 18655-18660.
01-12-2014
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetesMoltke I Grarup N Jørgensen ME Bjerregaard P Treebak JT Fumagalli M Korneliussen TS Andersen MA et al.
Nature,
Springer Nature vol. 512 (7513), 190-193.
18-06-2014
Human genome variability, natural selection and infectious diseasesFumagalli M Sironi M
Current Opinion in Immunology,
Elsevier vol. 30, 9-16.
29-05-2014
Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar BearsLiu S Lorenzen ED Fumagalli M Li B Harris K Xiong Z Zhou L Korneliussen TS et al.
Cell,
Elsevier vol. 157 (4), 785-794.
01-05-2014
ngsTools: methods for population genetics analyses from next-generation sequencing dataFumagalli M Vieira FG Linderoth T Nielsen R
Bioinformatics,
Oxford University Press (OUP) vol. 30 (10), 1486-1487.
23-01-20142013
Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics InferencesFumagalli M
Plos One,
Public Library of Science (Plos) vol. 8 (11)
18-11-2013
Quantifying Population Genetic Differentiation from Next-Generation Sequencing DataFumagalli M Vieira FG Korneliussen TS Linderoth T Huerta-Sánchez E Albrechtsen A Nielsen R
Genetics,
Oxford University Press (OUP) vol. 195 (3), 979-992.
01-11-2013
Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimationVieira FG Fumagalli M Albrechtsen A Nielsen R
Genome Research,
Cold Spring Harbor Laboratory vol. 23 (11), 1852-1861.
15-08-2013
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horseOrlando L Ginolhac A Zhang G Froese D Albrechtsen A Stiller M Schubert M Cappellini E et al.
Nature,
Springer Nature vol. 499 (7456), 74-78.
26-06-2013
A Scan for Human-Specific Relaxation of Negative Selection Reveals Unexpected Polymorphism in Proteasome GenesSomel M Sayres MAW Jordan G Huerta-Sanchez E Fumagalli M Ferrer-Admetlla A Nielsen R
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 30 (8), 1808-1815.
22-05-2013
Long‐Standing Balancing Selection in the THBS4 Gene: Influence on Sex‐Specific Brain Expression and Gray Matter Volumes in Alzheimer DiseaseCagliani R Guerini FR Rubio‐Acero R Baglio F Forni D Agliardi C Griffanti L Fumagalli M et al.
Human Mutation,
Hindawi vol. 34 (5), 743-753.
02-04-2013
Crohn's Disease Loci Are Common Targets of Protozoa-Driven SelectionCagliani R Pozzoli U Forni D Cassinotti A Fumagalli M Giani M Fichera M Lombardini M et al.
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 30 (5), 1077-1087.
06-02-20132012
An evolutionary history of the selectin gene cluster in humansFumagalli M Fracassetti M Cagliani R Forni D Pozzoli U Comi GP Marini F Bresolin N et al.
Heredity,
Springer Nature vol. 109 (2), 117-126.
02-05-2012
A Trans-Specific Polymorphism in ZC3HAV1 Is Maintained by Long-Standing Balancing Selection and May Confer Susceptibility to Multiple SclerosisCagliani R Guerini FR Fumagalli M Riva S Agliardi C Galimberti D Pozzoli U Goris A et al.
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 29 (6), 1599-1613.
06-01-20122011
Variants in SNAP25 are targets of natural selection and influence verbal performances in womenCagliani R Riva S Marino C Fumagalli M D’Angelo MG Riva V Comi GP Pozzoli U et al.
Cellular and Molecular Life Sciences,
Springer Nature vol. 69 (10), 1705-1715.
23-12-2011
Evolutionary genetic dissection of human interferonsManry J Laval G Patin E Fornarino S Itan Y Fumagalli M Sironi M Tichit M et al.
Journal of Experimental Medicine,
Rockefeller University Press vol. 208 (13), 2747-2759.
12-12-2011
Correction: Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human EvolutionFumagalli M Sironi M Pozzoli U Ferrer-Admetlla A Pattini L Nielsen R
Plos Genetics,
Public Library of Science (Plos) vol. 7 (11)
21-11-2011
Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human EvolutionFumagalli M Sironi M Pozzoli U Ferrer-Admettla A Pattini L Nielsen R
Plos Genetics,
Public Library of Science (Plos) vol. 7 (11)
01-11-2011
Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysisCagliani R Fumagalli M Guerini FR Riva S Galimberti D Comi GP Agliardi C Scarpini E et al.
Human Genetics,
Springer Nature vol. 131 (1), 87-97.
07-07-2011
A POSITIVELY SELECTED APOBEC3H HAPLOTYPE IS ASSOCIATED WITH NATURAL RESISTANCE TO HIV‐1 INFECTIONCagliani R Riva S Fumagalli M Biasin M Caputo SL Mazzotta F Piacentini L Pozzoli U et al.
Evolution,
Oxford University Press (OUP) vol. 65 (11), 3311-3322.
28-06-2011
Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolvingCagliani R Riva S Pozzoli U Fumagalli M Comi GP Bresolin N Clerici M Sironi M
Bmc Ecology and Evolution,
Springer Nature vol. 11 (1)
17-06-2011
An Evolutionary Analysis of RAC2 Identifies Haplotypes Associated with Human Autoimmune DiseasesSironi M Guerini FR Agliardi C Biasin M Cagliani R Fumagalli M Caputo D Cassinotti A et al.
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 28 (12), 3319-3329.
16-06-20112010
Genetic diversity at endoplasmic reticulum aminopeptidases is maintained by balancing selection and is associated with natural resistance to HIV-1 infectionCagliani R Riva S Biasin M Fumagalli M Pozzoli U Caputo SL Mazzotta F Piacentini L et al.
Human Molecular Genetics,
Oxford University Press (OUP) vol. 19 (23), 4705-4714.
15-09-2010
Long-term balancing selection maintains trans-specific polymorphisms in the human TRIM5 geneCagliani R Fumagalli M Biasin M Piacentini L Riva S Pozzoli U Bonaglia MC Bresolin N et al.
Human Genetics,
Springer Nature vol. 128 (6), 577-588.
02-09-2010
The landscape of human genes involved in the immune response to parasitic wormsFumagalli M Pozzoli U Cagliani R Comi GP Bresolin N Clerici M Sironi M
Bmc Ecology and Evolution,
Springer Nature vol. 10 (1)
31-08-2010
Population Genetics of IFIH1: Ancient Population Structure, Local Selection, and Implications for Susceptibility to Type 1 DiabetesFumagalli M Cagliani R Riva S Pozzoli U Biasin M Piacentini L Comi GP Bresolin N et al.
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 27 (11), 2555-2566.
10-06-2010
Fine mapping of AHI1 as a schizophrenia susceptibility gene: from association to evolutionary evidenceTorri F Akelai A Lupoli S Sironi M Amann‐Zalcenstein D Fumagalli M Dal Fiume C Ben‐Asher E et al.
The Faseb Journal,
Wiley vol. 24 (8), 3066-3082.
06-04-2010
Polymorphisms in the CPB2 Gene Are Maintained by Balancing Selection and Result in Haplotype-Preferential Splicing of Exon 7Cagliani R Fumagalli M Riva S Pozzoli U Fracassetti M Bresolin N Comi GP Sironi M
Molecular Biology and Evolution,
Oxford University Press (OUP) vol. 27 (8), 1945-1954.
17-03-2010
Response to Wilson et al.Fumagalli M Cagliani R Pozzoli U Sironi M
American Journal of Human Genetics,
Elsevier vol. 86 (3), 493-495.
01-03-2010
Genome-Wide Identification of Susceptibility Alleles for Viral Infections through a Population Genetics ApproachFumagalli M Pozzoli U Cagliani R Comi GP Bresolin N Clerici M Sironi M
Plos Genetics,
Public Library of Science (Plos) vol. 6 (2)
19-02-2010
Genetic variability in the ACE gene region surrounding the Alu I/D polymorphism is maintained by balancing selection in human populationsCagliani R Fumagalli M Riva S Pozzoli U Comi GP Bresolin N Sironi M
Pharmacogenetics and Genomics,
Wolters Kluwer vol. 20 (2), 131-134.
01-02-2010
The role of protozoa-driven selection in shaping human genetic variabilityPozzoli U Fumagalli M Cagliani R Comi GP Bresolin N Clerici M Sironi M
Trends in Genetics,
Elsevier vol. 26 (3), 95-99.
25-01-2010
Balancing selection in the extended MHC region maintains a subset of alleles with opposite risk profile for different autoimmune diseasesCagliani R Riva S Fumagalli M Pozzoli U Comi GP Bresolin N Clerici M Sironi M
Genome Biology,
Springer Nature vol. 11 (Suppl 1)
01-01-20102009
A population genetics study of the Familial Mediterranean Fever gene: evidence of balancing selection under an overdominance regimeFumagalli M Cagliani R Pozzoli U Riva S Comi GP Menozzi G Bresolin N Sironi M
Genes & Immunity,
Springer Nature vol. 10 (8), 678-686.
13-08-2009
Diverse Evolutionary Histories for β-adrenoreceptor Genes in HumansCagliani R Fumagalli M Pozzoli U Riva S Comi GP Torri F Macciardi F Bresolin N et al.
American Journal of Human Genetics,
Elsevier vol. 85 (1), 64-75.
01-07-2009
A complex selection signature at the human AVPR1B geneCagliani R Fumagalli M Pozzoli U Riva S Cereda M Comi GP Pattini L Bresolin N et al.
Bmc Ecology and Evolution,
Springer Nature vol. 9 (1)
01-06-2009
Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditionsFumagalli M Pozzoli U Cagliani R Comi GP Riva S Clerici M Bresolin N Sironi M
Journal of Experimental Medicine,
Rockefeller University Press vol. 206 (6), 1395-1408.
25-05-20092008
Widespread balancing selection and pathogen-driven selection at blood group antigen genesFumagalli M Cagliani R Pozzoli U Riva S Comi GP Menozzi G Bresolin N Sironi M
Genome Research,
Cold Spring Harbor Laboratory vol. 19 (2), 199-212.
07-11-2008
Both selective and neutral processes drive GC content evolution in the human genomePozzoli U Menozzi G Fumagalli M Cereda M Comi GP Cagliani R Bresolin N Sironi M
Bmc Ecology and Evolution,
Springer Nature vol. 8 (1)
27-03-2008
The signature of long-standing balancing selection at the human defensin β-1 promoterCagliani R Fumagalli M Riva S Pozzoli U Comi GP Menozzi G Bresolin N Sironi M
Genome Biology,
Springer Nature vol. 9 (9)
01-01-2008
On the use of generative models for evolutionary inference of malaria vectors from genomic dataEneli AA Siu PC Perez MF Burt A Fumagalli M Mathieson S
In
Biorxiv
Semi-supervised detection of natural selection with positive-unlabeled learningArnab SP dos Santos ALC Fumagalli M DeGiorgio M
In
Biorxiv
Disentangling signatures of selection before and after European colonization in Latin AmericansMendoza-Revilla J Chacón-Duque JC Fuentes-Guajardo M Ormond L Wang K Hurtado M Villegas V Granja V et al.
In
Biorxiv
Exome-wide association study in 54,698 south Asians identifies novel type 2 diabetes associations with HNF4A and GP2Hodgson S Bui V Bigossi M Bigossi M Bigossi M Huerta-Chagoya A Hu S Blee AM et al.
In
Medrxiv
An ancient and still ongoing genetic conflict between transposable elements and their repressorsCagliani R Forni D Mozzi A Sarama R Pozzoli U Fumagalli M Sironi M
In
Research Square
Recent positive selection implicates IP6K3 and MAPT as metabolically relevant loci in South AsiansPennarun E Banfalvi B Li Y Bui V Hodgson S Bigossi M Arnab S Naimah T et al.
In
Medrxiv
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia languageMas-Sandoval A Jin C Fracassetti M Fumagalli M
HMMploidy: inference of ploidy levels from short-read sequencing dataSoraggi S Rhodes J Altinkaya I Tarrant O Balloux F Fisher MC Fumagalli M
In
Biorxiv
Detecting adaptive introgression in human evolution using convolutional neural networksGower G Picazo PI Fumagalli M Racimo F
In
Biorxiv
Distinguishing between recent balancing selection and incomplete sweep using deep neural networksIsildak U Stella A Fumagalli M
In
Biorxiv
Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta CoalescentKorfmann K Sellinger T Freund F Fumagalli M Tellier A
In
Biorxiv
The genomic footprint of social stratification in admixing American populationsMas-Sandoval A Mathieson S Fumagalli M
In
Biorxiv
Genetic diversity of CHC22 clathrin impacts its function in glucose metabolismFumagalli M Camus SM Diekmann Y Burke A Camus MD Norman PJ Joseph AP Abi-Rached L et al.
In
Biorxiv
Sex-Biased Gene Expression Resolves Sexual Conflict through the Evolution of Sex-Specific Genetic ArchitectureWright AE Fumagalli M Cooney CR Bloch NI Vieira FG Buechel SD Kolm N Mank JE
In
Biorxiv
Archaic adaptive introgression in TBX15/WARS2Racimo F Gokhman D Fumagalli M Ko A Hansen T Moltke I Albrechtsen A Carmel L et al.
In
Biorxiv
The origin and evolution of maize in the American Southwestda Fonseca RR Smith BD Wales N Cappellini E Skoglund P Fumagalli M Samaniego JA Carøe C et al.
In
Biorxiv
Genome-culture coevolution promotes rapid divergence in the killer whaleFoote AD Vijay N Ávila-Arcos MC Baird RW Durban JW Fumagalli M Gibbs RA Hanson MB et al.
In
Biorxiv
The importance of small island populations for the long-term survival of endangered large-bodied insular mammalsAninta SG Drinkwater R Carmagnini A Deere NJ Priyono DS Andayani N Winarni NL Supriatna J et al.
In
Biorxiv