Publications
Publications of specific relevance to the Centre for Bioengineering
2026
Promptable segmentation with region exploration enables minimal-effort expert-level prostate cancer delineationYang J Thorley N Abbasi AN Punwani S Tse Z Hu Y Saeed SU
International Journal of Computer Assisted Radiology and Surgery,
Springer Nature, 1-9.
17-04-2026 Continual Pretraining Prostate MRI ViT Encoder for Task AlignmentSidiqi BA Wang Y Saeed SU Huang S Daniel A Hu Y
2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI). vol. 00, 1-5.
11-04-2026 Radiomics-Integrated Deep Learning With Hierarchical Loss for Osteosarcoma Histology ClassificationChen Y Ye Z Saeed SU Yu O Ni S Huang J Hu Y
2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI). vol. 00, 1-5.
11-04-2026 Understanding the Transfer Limits of Vision Foundation ModelsHuang S Wang Y Thorley N Ng A Saeed S Emberton M Punwani S Kasivisvanathan V et al.
2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI). vol. 00, 1-5.
11-04-2026 Maximizing T2-Only Prostate Cancer Localization from Expected Diffusion Weighted ImagingYi W Wang Y Yan W Zhang H Thorley N Ng A Punwani S Bianco F et al.
In
Arxiv 01-04-2026 ProFound: A moderate-sized vision foundation model for multi-task prostate imagingWang Y Xu Y Yi W Saeed SU Thorley N Ng A Zhou Y Yan W et al.
In
Arxiv 04-03-2026 Retrieving Patient-Specific Radiomic Feature Sets for Transparent Knee MRI AssessmentChen Y Ni S Zhang J Saeed SU Wang Y Ivanova A Hargunani R Liu C et al.
In
Arxiv 02-03-2026 Quantitative analysis of uterine peristalsis in women with adenomyosis using optical flow for motion quantification.Latif S Saeed SU Hu Y De Braud L Yasmin E Saridogan E Mavrelos D
Reprod Biomed Online vol. 52 (3)
01-03-2026 Biomechanics-informed Non-rigid Medical Image Registration with Elasticity TheoriesMin Z Baum ZMC Saeed SU Ma S Du X Emberton M Barratt DC Taylor ZA et al.
IEEE Transactions on Medical Imaging,
Institute of Electrical and Electronics Engineers (IEEE) vol. PP (99), 1-1.
23-02-2026 Promptable segmentation with region exploration enables minimal-effort expert-level prostate cancer delineationYang J Thorley N Abbasi AN Punwani S Tse Z Hu Y Saeed SU
In
Arxiv 19-02-2026 Understanding the Transfer Limits of Vision Foundation ModelsHuang S Wang Y Thorley N Ng A Saeed S Emberton M Punwani S Kasivisvanathan V et al.
In
Arxiv 22-01-2026 Radiomics-Integrated Deep Learning with Hierarchical Loss for Osteosarcoma Histology ClassificationChen Y Ye Z Saeed SU Yu O Ni S Huang J Hu Y
In
Arxiv 14-01-2026 Interpretability and Individuality in Knee MRI: Patient-Specific Radiomic Fingerprint with Reconstructed Healthy PersonasChen Y Ni S Li S Saeed SU Ivanova A Hargunani R Huang J Liu C et al.
In
Arxiv 13-01-2026 Radiomic Fingerprints for Knee MR Image AssessmentChen Y Ni S Saeed SU Ivanova A Hargunani R Huang J Liu C Hu Y
Lecture Notes in Computer Science,
Springer Nature vol. 16464, 64-74.
01-01-2026 Policy to Assist Iteratively Local Segmentation: Optimising Modality and Location Selection for Prostate Cancer LocalisationWu X Saeed SU Wang Y Coll EB Hu Y
Lecture Notes in Computer Science,
Springer Nature vol. 16241, 328-337.
01-01-2026 PromptReg: Interactive Registration by “Corresponding Prompts” for Segment Anything Model (SAM)Huang S Xu T Li J Saeed SU Shen Z Barratt DC Hu Y
IEEE Transactions on Image Processing,
Institute of Electrical and Electronics Engineers (IEEE) vol. 35, 4383-4396.
01-01-2026 2025
TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External TrackerLi Q Saeed SU Huang Y Luo M Yan Z Chen J Yang X Ni D et al.
In
Arxiv 13-11-2025Cryo-RL: automating prostate cancer cryoablation planning with reinforcement learningSimangan T Abbasi AN Hu Y Saeed SU
In
Arxiv 21-10-2025 Patient-Specific Radiomic Feature Selection with Reconstructed Healthy Persona of Knee MR ImagesChen Y Ni S Saeed SU Ivanova A Hargunani R Huang J Liu C Hu Y
Lecture Notes in Computer Science. vol. 15973, 441-451.
20-09-2025 Policy to Assist Iteratively Local Segmentation: Optimising Modality and Location Selection for Prostate Cancer LocalisationWu X Saeed SU Wang Y Coll EB Hu Y
In
Arxiv 05-08-2025 Promptable Cancer Segmentation Using Minimal Expert-Curated DataKaram L Wang Y Kasivisvanathan V Rusu M Hu Y Saeed SU
Lecture Notes in Computer Science. vol. 15918, 44-58.
15-07-2025 SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver TumoursTan C Hu Y Saeed SU
Lecture Notes in Computer Science. vol. 15918, 59-72.
15-07-2025 Reasoning in machine vision: learning to think fast and slowSaeed SU Wang Y Kasivisvanathan V Davidson BR Clarkson MJ Hu Y Alexander DC
In
Arxiv 27-06-2025 Radiomic fingerprints for knee MR images assessmentChen Y Ni S Saeed SU Ivanova A Hargunani R Huang J Liu C Hu Y
In
Arxiv 25-06-2025 Quantitative analysis of uterine peristalsis in women with adenomyosis using optical flow for motion quantificationLatif S Saeed SU Hu Y De Braud L Yasmin E Saridogan E Mavrelos D
Reproductive Biomedicine Online,
Elsevier vol. 52 (3)
30-05-2025 SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver TumoursTan C Hu Y Saeed SU
In
Arxiv 25-05-2025 Promptable cancer segmentation using minimal expert-curated dataKaram L Wang Y Kasivisvanathan V Rusu M Hu Y Saeed SU
In
Arxiv 23-05-2025 T2-Only Prostate Cancer Prediction by Meta-Learning from BI-Parametric MR ImagingYi W Wang Y Thorley N Ng A Punwani S Kasivisvanathan V Barratt DC Saeed SU et al.
2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI). vol. 00, 1-5.
17-04-2025 Guided ultrasound acquisition for nonrigid image registration using reinforcement learningSaeed SU Ramalhinho J Montaña-Brown N Bonmati E Pereira SP Davidson B Clarkson MJ Hu Y
Medical Image Analysis,
Elsevier vol. 102
29-03-2025 Patient-specific radiomic feature selection with reconstructed healthy persona of knee MR imagesChen Y Ni S Ivanova A Saeed SU Hargunani R Huang J Liu C Hu Y
In
Arxiv 17-03-2025 Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic SegmentationSaeed SU Huang S Ramalhinho J Gayo IJMB Montaña-Brown N Bonmati E Pereira SP Davidson B et al.
IEEE Transactions on Pattern Analysis and Machine Intelligence,
Institute of Electrical and Electronics Engineers (IEEE) vol. 47 (2), 825-839.
09-01-2025 Conditional Image Synthesis Using Generative Diffusion Models: ApplicationSaeed SU Hu Y
Generative Machine Learning Models in Medical Image Computing,
Springer Nature, 65-65.
01-01-2025 TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External TrackerLi Q Saeed SU Huang Y Luo M Yan Z Chen J Yang X Ni D et al.
Arxiv Preprint Arxiv:2506.21765 01-01-2025 Reasoning in machine vision: learning to think fast and slowSaeed SU Wang Y Kasivisvanathan V Davidson BR Clarkson MJ Hu Y Alexander DC
Arxiv Preprint Arxiv:2506.22075 01-01-2025 Cryo-RL: automating prostate cancer cryoablation planning with reinforcement learningSaeed SU others
01-01-2025 2024
Conditional Image Synthesis Using Generative Diffusion Models: Application to Pathological Prostate MR Image GenerationSaeed SU Hu Y
In
Generative Machine Learning Models in Medical Image Computing,
Springer Nature 65-82.
06-12-2024 T2-Only Prostate Cancer Prediction by Meta-Learning from Bi-Parametric MR ImagingYi W Wang Y Thorley N Ng A Punwani S Kasivisvanathan V Barratt DC Saeed SU et al.
In
Arxiv 11-11-2024 SAMReg: SAM-enabled Image Registration with ROI-based CorrespondenceHuang S Xu T Shen Z Saeed SU Yan W Barratt D Hu Y
In
Arxiv 17-10-2024 Segmentation by registration-enabled SAM prompt engineering using five reference imagesChen Y Ivanova A Saeed SU Hargunani R Huang J Liu C Hu Y
In
Arxiv 25-07-2024 Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear ElasticityMin Z Baum ZMC Saeed SU Emberton M Barratt DC Taylor ZA Hu Y
In
Arxiv 09-07-2024 P-304 Quantitative analysis of uterine peristalsis using optical flow for motion quantification in women with moderate/severe adenomyosis undergoing frozen-thawed embryo transfer following prolonged downregulation with GnRHanalogueLatif S Saeed SU Hu Y De Braud L Atik Y Yasmin E Saridogan E Mavrelos D
Human Reproduction,
Oxford University Press (OUP) vol. 39 (Supplement_1)
03-07-2024 Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR ImagesPocius M Yan W Barratt DC Emberton M Clarkson MJ Hu Y Saeed SU
2024 IEEE International Symposium on Biomedical Imaging (ISBI). vol. 00, 1-5.
30-05-2024 Competing for pixels: a self-play algorithm for weakly-supervised segmentationSaeed SU Huang S Ramalhinho J Gayo IJMB Montaña-Brown N Bonmati E Pereira SP Davidson B et al.
In
Arxiv 26-05-2024 One registration is worth two segmentationsHuang S Xu T Shen Z Saeed SU Yan W Barratt D Hu Y
In
Arxiv 17-05-2024 Active learning using adaptable task-based prioritisationSaeed SU Ramalhinho J Pinnock M Shen Z Fu Y Montaña-Brown N Bonmati E Barratt DC et al.
Medical Image Analysis,
Elsevier vol. 95
16-04-2024 The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsyGayo IJMB Saeed SU Bonmati E Barratt DC Clarkson MJ Hu Y
International Journal of Computer Assisted Radiology and Surgery,
Springer Nature vol. 19 (6), 1003-1012.
07-03-2024 Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR imagesPocius M Yan W Barratt DC Emberton M Clarkson MJ Hu Y Saeed SU
In
Arxiv 21-02-2024 Semi-weakly-supervised neural network training for medical image registrationLi Y Fu Y Gayo IJMB Yang Q Min Z Saeed SU Yan W Wang Y et al.
In
Arxiv 16-02-2024 Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusionSaeed SU Syer T Yan W Yang Q Emberton M Punwani S Clarkson MJ Barratt D et al.
Medical imaging with deep learning PMLR., 814-828.
01-01-2024 Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass SegmentationFu Y Li Y Saeed SU Clarkson MJ Hu Y
Lecture Notes in Computer Science. vol. 14533, 86-95.
01-01-2024 Semi-weakly-supervised neural network training for medical image registrationLi Y Fu Y Gayo IJMB Yang Q Min Z Saeed SU Yan W Wang Y et al.
Arxiv Preprint Arxiv:2402.10728 01-01-2024 One Registration is Worth Two SegmentationsHuang S Xu T Shen Z Saeed SU Yan W Barratt D Hu Y
Lecture Notes in Computer Science. vol. 15012, 665-675.
01-01-2024 Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear ElasticityMin Z Baum ZMC Saeed SU Emberton M Barratt DC Taylor ZA Hu Y
Lecture Notes in Computer Science. vol. 15002, 564-574.
01-01-2024 Segmentation by Registration-Enabled SAM Prompt Engineering Using Five Reference ImagesChen Y Ivanova A Saeed SU Hargunani R Huang J Liu C Hu Y
Lecture Notes in Computer Science. vol. 15249, 241-252.
01-01-2024 Competing for pixels: a self-play algorithm for weakly-supervised semantic segmentationSaeed SU Huang S Ramalhinho J Gayo IJMB Monta na-Brown N Bonmati E Pereira SP Davidson B et al.
IEEE Transactions on Pattern Analysis and Machine Intelligence,
IEEE 01-01-2024 SAMReg: SAM-enabled image registration with ROI-based correspondenceHuang S Xu T Shen Z Saeed SU Yan W Barratt D Hu Y
Arxiv Preprint Arxiv:2410.14083 01-01-2024 Quantitative analysis of uterine peristalsis using optical flow for motion quantification in women with moderate/severe adenomyosis undergoing frozen-thawed embryo transfer following prolonged downregulation with GnRHanalogueLatif S Saeed SU Hu Y De Braud L Atik Y Yasmin E Saridogan E Mavrelos D
HUMAN REPRODUCTION OXFORD UNIV PRESS GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND. vol. 39, I338-I338.
01-01-2024 2023
A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising ModelsFu Y Li Y Saeed SU Clarkson MJ Hu Y
In
Arxiv 08-12-2023 A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising ModelsFu Y Li Y Saeed SU Clarkson MJ Hu Y
Melba Journal,
Machine Learning For Biomedical Imaging vol. 2 (Generative Models), 507-546.
07-12-2023 Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS ImagesYi W Stavrinides V Baum ZMC Yang Q Barratt DC Clarkson MJ Hu Y Saeed SU
Lecture Notes in Computer Science. vol. 14348, 277-288.
15-10-2023 Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registrationLi Y Fu Y Gayo IJMB Yang Q Min Z Saeed SU Yan W Wang Y et al.
Medical Image Analysis,
Elsevier vol. 90
26-08-2023 Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registrationLi Y Fu Y Gayo I Yang Q Min Z Saeed S Yan W Wang Y et al.
In
Arxiv 25-08-2023 Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS ImagesYi W Stavrinides V Baum ZMC Yang Q Barratt DC Clarkson MJ Hu Y Saeed SU
In
Arxiv 22-08-2023 Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass SegmentationFu Y Li Y Saeed SU Clarkson MJ Hu Y
In
Arxiv 18-08-2023 Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusionSaeed SU Syer T Yan W Yang Q Emberton M Punwani S Clarkson MJ Barratt DC et al.
In
Arxiv 03-03-2023 Non-rigid Medical Image Registration using Physics-informed Neural NetworksMin Z Baum ZMC Saeed SU Emberton M Barratt DC Taylor ZA Hu Y
In
Arxiv 20-02-2023 Non-rigid Medical Image Registration using Physics-informed Neural NetworksMin Z Baum ZMC Saeed SU Emberton M Barratt DC Taylor ZA Hu Y
Lecture Notes in Computer Science. vol. 13939, 601-613.
01-01-2023 SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive SurgeryAbdulaal A Baum ZM Clarkson M Davidson B Dowrick T Foti S Gao J He C et al.
,
Curran Associates, 26121-26134.
01-01-2023 MR to ultrasound registration for prostate challenge-datasetBaum Z Saeed S Min Z Hu Y Barratt D
Medical Image Computing and Computer Assisted Intervention–MICCAI. vol. 2023
01-01-2023 2022
Active learning using adaptable task-based prioritisationSaeed SU Ramalhinho J Pinnock M Shen Z Fu Y Montaña-Brown N Bonmati E Barratt DC et al.
In
Arxiv 03-12-2022 Strategising template-guided needle placement for MR-targeted prostate biopsyGayo IJ Saeed SU Barratt DC Clarkson MJ Hu Y
In
Arxiv 21-07-2022 P-314 Quantitative analysis of uterine peristalsis using optical flow for motion quantificationLatif S Saeed SU Saridogan E Hu Y Mavrelos D
Human Reproduction,
Oxford University Press (OUP) vol. 37 (Supplement_1)
29-06-2022 Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CTRamalhinho J Koo B Montaña-Brown N Saeed SU Bonmati E Gurusamy K Pereira SP Davidson B et al.
International Journal of Computer Assisted Radiology and Surgery,
Springer Nature vol. 17 (8), 1461-1468.
02-04-2022 Image quality assessment for machine learning tasks using meta-reinforcement learningSaeed SU Fu Y Stavrinides V Baum ZMC Yang Q Rusu M Fan RE Sonn GA et al.
In
Arxiv 27-03-2022 Image quality assessment for machine learning tasks using meta-reinforcement learningSaeed SU Fu Y Stavrinides V Baum ZMC Yang Q Rusu M Fan RE Sonn GA et al.
Medical Image Analysis,
Elsevier vol. 78
21-03-2022 Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentationSaeed SU Yan W Fu Y Giganti F Yang Q Baum ZMC Rusu M Fan RE et al.
Melba Journal,
Machine Learning For Biomedical Imaging vol. 1 (IPMI 2021), 1-29.
22-02-2022 Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentationSaeed SU Yan W Fu Y Giganti F Yang Q Baum ZMC Rusu M Fan RE et al.
In
Arxiv 20-02-2022 Quantitative analysis of uterine peristalsis using optical flow for motion quantificationLatif S Saeed SU Saridogan E Hu Y Mavrelos D
BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA. vol. 129, 183-184.
01-01-2022 Strategising Template-Guided Needle Placement for MR-targeted Prostate BiopsyGayo IJ Saeed SU Barratt DC Clarkson MJ Hu Y
Lecture Notes in Computer Science. vol. 13581, 149-158.
01-01-2022 2021
Adaptable image quality assessment using meta-reinforcement learning of task amenabilitySaeed SU Fu Y Stavrinides V Baum ZMC Yang Q Rusu M Fan RE Sonn GA et al.
In
Arxiv 31-07-2021 Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labelsChalcroft LF Qu J Martin SA Gayo IJ Minore GV Singh IR Saeed SU Yang Q et al.
In
Arxiv 28-07-2021 Learning image quality assessment by reinforcing task amenable data selectionSaeed SU Fu Y Baum ZMC Yang Q Rusu M Fan RE Sonn GA Barratt DC et al.
In
Arxiv 15-02-2021 Learning Image Quality Assessment by Reinforcing Task Amenable Data SelectionSaeed SU Fu Y Baum ZMC Yang Q Rusu M Fan RE Sonn GA Barratt DC et al.
Lecture Notes in Computer Science. vol. 12729, 755-766.
01-01-2021 Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer LabelsChalcroft LF Qu J Martin SA Gayo IJ Minore GV Singh IR Saeed SU Yang Q et al.
Lecture Notes in Computer Science. vol. 12967, 25-34.
01-01-2021 Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task AmenabilitySaeed SU Fu Y Stavrinides V Baum ZMC Yang Q Rusu M Fan RE Sonn GA et al.
Lecture Notes in Computer Science. vol. 12967, 191-201.
01-01-2021 2020
DeepReg: a deep learning toolkit for medical image registrationFu Y Brown NM Saeed SU Casamitjana A Baum ZMC Delaunay R Yang Q Grimwood A et al.
In
Arxiv 04-11-2020 DeepReg: a deep learning toolkit for medical image registrationFu Y Brown N Saeed S Casamitjana A Baum Z Delaunay R Yang Q Grimwood A et al.
The Journal of Open Source Software,
The Open Journal vol. 5 (55)
01-11-2020 Introduction to Medical Image Registration with DeepReg, Between Old and NewBrown NM Fu Y Saeed SU Casamitjana A Baum ZMC Delaunay R Yang Q Grimwood A et al.
In
Arxiv 07-09-2020 Prostate motion modelling using biomechanically-trained deep neural networks on unstructured nodesSaeed SU Taylor ZA Pinnock MA Emberton M Barratt DC Hu Y
In
Arxiv 09-07-2020 Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured NodesSaeed SU Taylor ZA Pinnock MA Emberton M Barratt DC Hu Y
Lecture Notes in Computer Science. vol. 12264, 650-659.
01-01-2020 Introduction to medical image registration with deepreg, between old and newMontana Brown N Fu Y Saeed SU Casamitjana A Baum ZMC Delaunay R Yang Q Grimwood A et al.
Arxiv E-Prints, arXiv-2009.
01-01-2020 Cryo-RL: automating prostate cancer cryoablation planning with reinforcement learningSaeed SU
International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD) 2025.
1 Details of EquationsMin Z Baum ZMC Saeed SU Emberton M Barratt DC Taylor ZA Hu Y
