Research
Structural Biology, Bacterial pathogenesis, Membrane proteins, X-ray Crystallography, Cryo-EM
Interests
Darbari group is focussed on the structural biology of bacterial membrane-spanning molecular machines (secretion systems, mammalian cell entry lipid transporters) and bacterial effectors to decipher their molecular mechanism required for survival in hostile environments and pathogenesis. Bacterial membranes are the first line of defence and crucial for stress response. Mammalian Cell entry (MCE) proteins are ubiquitous in diderm bacteria for maintaining cell wall homeostasis and bacterial survival in harsh environments. They are however not essential in many bacteria during normal growth. These substrate-binding proteins assemble to form lipid transporters in various double membranes of distinct lipid compositions with presumably distinct substrate specificity and function. The mechanism for substrate specificity is still unclear and how lipid specificity affects membrane integrity or membrane function or virulence is still unknown. Our group is interested in delineating the role of lipid specificity and binding to membrane related functions and specifically the unity and diversity of function across diderm bacteria. Our group employs various structural biology (X-ray Crystallography, TEM), biochemical, biophysical and cell biology techniques for structural and functional characterisation.
Publications

Publications of specific relevance to the Centre for Molecular Cell Biology
2025
Amyloid-β oligomers, curvilinear and annular assemblies, imaged by cryo-ET, cryo-EM, and AFMLiang R Khursheed A Tahirbegi B Torres-Flores AP Qi S Tian Y Zhang H Szwedziak P et al.
Science Advances,
American Association For The Advancement of Science (Aaas) vol. 11 (35)
27-08-20252022
Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturationCorsini P Wang S Rehman S Fenn K Sagar A Sirovica S Cleaver L Edwards-Gayle C et al.
Access Microbiology,
Microbiology Society vol. 4 (5)
18-05-2022
Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturationCorsini PM Wang S Rehman S Fenn K Sagar A Sirovica S Cleaver L Edwards-Gayle CJC et al.
Npj Biofilms and Microbiomes,
Springer Nature vol. 8 (1)
25-02-20222020
Electrostatic Switching Controls Channel Dynamics of the Sensor Protein VirB10 in A. tumefaciens Type IV Secretion SystemDarbari VC Ciccone J Patel JS Islam B Agarwal PK Haider S
Acs Omega,
American Chemical Society 04-02-2020
Mycobacterium tuberculosis Uses Mce Proteins to Interfere With Host Cell SignalingFenn K Wong CT Darbari VC
Frontiers in Molecular Biosciences,
Frontiers Media vol. 6
08-01-20202017
Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription InitiationGlyde R Fuzhou Y DARBARI VC Zhang N Buck M Zhang X
Molecular Cell,
Elsevier 01-06-20172016
The bacterial enhancer-dependent RNA polymerase.Zhang N Darbari VC Glyde R Zhang X Buck M
Biochem J,
Biochemical Society vol. 473 (21), 3741-3753.
27-10-2016
The dimeric architecture of checkpoint Mec1ATR and Tel1ATM reveal a common structural organizationSawicka M Wanrooij PH Darbari VC Tannous E Hailemariam S Bose D Makarova AV Burgers PM et al.
Journal of Biological Chemistry,
American Society For Biochemistry and Molecular Biology 28-04-20162015
Structures of the RNA polymerase-σ54 reveal new and conserved regulatory strategiesYang Y Darbari VC Zhang N Lu D Glyde R Wang Y-P Winkelman JT Gourse RL et al.
Science,
American Association For The Advancement of Science vol. 349, 882-885.
01-01-2015
Structural biology of bacterial type IV secretion systemsChandran Darbari V Waksman G
01-01-20152014
Molecular basis of nucleotide-dependent substrate engagement and remodeling by an AAA+ activatorDarbari VC Lawton E Lu D Burrows PC Wiesler S Joly N Zhang N Zhang X et al.
Nucleic Acids Research,
Oxford University Press (OUP) vol. 42 (14), 9249-9261.
25-07-20142013
Structure of a bacterial type IV secretion core complex at subnanometre resolutionRivera-Calzada A Fronzes R Savva CG Chandran V Lian PW Laeremans T Pardon E Steyaert J et al.
The Embo Journal,
Embo Press vol. 32, 1195-1204.
01-01-2013
Type IV secretion machinery: molecular architecture and functionChandran V
Biochemical Society Transactions,
Portland Press Limited vol. 41, 17-28.
01-01-20132011
An Agrobacterium VirB10 mutation conferring a type IV secretion system gating defectBanta LM Kerr JE Cascales E Giuliano ME Bailey ME McKay C Chandran V Waksman G et al.
Journal of Bacteriology,
Am Soc Microbiol vol. 193, 2566-2574.
01-01-2011
Polynucleotide phosphorylase activity may be modulated by metabolites in Escherichia coliNurmohamed S Vincent HA Titman CM Chandran V Pears MR Du D Griffin JL Callaghan AJ et al.
Journal of Biological Chemistry,
Asbmb vol. 286, 14315-14323.
01-01-20112010
Two-step and one-step secretion mechanisms in Gram-negative bacteria: contrasting the type IV secretion system and the chaperone-usher pathway of pilus biogenesisRêgo AT Chandran V Waksman G
Biochemical Journal,
Portland Press Limited vol. 425, 475-488.
01-01-20102009
Structure of the outer membrane complex of a type IV secretion systemChandran V Fronzes R Duquerroy S Cronin N Navaza J Waksman G
Nature,
Nature Publishing Group vol. 462, 1011-1015.
01-01-2009
Protein oligomerization in the bacterial outer membrane (Review)Meng G Fronzes R Chandran V Remaut H Waksman G
Molecular Membrane Biology,
Taylor & Francis vol. 26, 136-145.
01-01-2009
Structural biology of bacterial secretion systems in Gram-negative pathogens-potential for new drug targetsDurand E Verger D Rêgo AT Chandran V Meng G Fronzes R Waksman G
Infectious Disorders-Drug Targets (Formerly Current Drug Targets-Infectious Disorders),
Bentham Science Publishers vol. 9, 518-547.
01-01-20092007
Recognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase EChandran V Poljak L Vanzo NF Leroy A Miguel RNN Fernandez-Recio J Parkinson J Burns C et al.
Journal of Molecular Biology,
Elsevier vol. 367, 113-132.
01-01-20072006
The RNA degradosome: life in the fast lane of adaptive molecular evolutionMarcaida MJ DePristo MA Chandran V Carpousis AJ Luisi BF
Trends in Biochemical Sciences,
Elsevier vol. 31, 359-365.
01-01-2006
Recognition of enolase in the Escherichia coli RNA degradosomeChandran V Luisi BF
Journal of Molecular Biology,
Elsevier vol. 358, 8-15.
01-01-2006
Structure of the regulatory apparatus of a calcium-dependent protein kinase (CDPK): a novel mode of calmodulin-target recognitionChandran V Stollar EJ Lindorff-Larsen K Harper JF Chazin WJ Dobson CM Luisi BF Christodoulou J
Journal of Molecular Biology,
Elsevier vol. 357, 400-410.
01-01-2006
Structural and functional characterisation of the protein-protein and protein-RNA interactions in the RNA degradosomeChandran V
01-01-20062004
Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase ECallaghan AJ Aurikko JP Ilag LL Grossmann JG Chandran V Kühnel K Poljak L Carpousis AJ et al.
Journal of Molecular Biology,
Elsevier vol. 340, 965-979.
01-01-2004
Role of L-lysine HCl in adoptive immune therapy towards development of suitable tuberculosis vaccinationDasgupta S Chandran V Bhinge A Sewlikar S Nimbkar A Datta D
Indian Journal of Experimental Biology,
Publications & Information Directorate, Csir vol. 42, 758-765.
01-01-2004
Protein-protein interactions in the RNA degradosomeChandran V Callaghan A Long J Zaid O Aurikka J Ilag L Robinson C Carpousis AJ et al.
PROTEIN SCIENCE COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT 500 SUNNYSIDE BLVD, WOODBURY, NY 11797-2924 USA. vol. 13, 144-144.
01-01-20042003
Cylindrical channels from concave helicesCalladine CR Pratap V Chandran V Mizuguchi K Luisi BF
Science,
American Association For The Advancement of Science vol. 299, 661-662.
01-01-2003
Role of L-lysine HCl in immunopotentiation towards development of suitable tuberculosis vaccinationDasgupta S Bhinge A Chandran V Sewlikar S Nimbkar A Datta D
Vaccine,
Elsevier vol. 21, 4722-4727.
01-01-20032001
Lysine: Is it worth more?Datta D Bhinge A Chandran V
Cytotechnology,
Springer vol. 36, 3-32.
01-01-20012000
Effect of cationic amino acid, l-lysine and its polymers on the growth and secretion of hybridoma cell line OKT-3Datta D Kundu PK Biswas S Dasgupta S Bhinge A Chandran V
Hybridoma,
Mary Ann Liebert, Inc. vol. 19, 339-346.
01-01-2000
Molecular and cellular insight into Escherichia coli SslE and its role during biofilm maturationCorsini PM Wang S Rehman S Fenn K Sagar A Sirovica S Cleaver L Edwards-Gayle CJC et al.
In
Biorxiv
Structural architecture of amyloid-β oligomers, curvilinear protofibrils and annular assemblies, imaged by cryo-EM and cryo-ETLiang R Torres-Flores AP Qi S Khursheed A Tian Y Szwedziak P Baker MD Volkov VA et al.
In
Biorxiv