Publications
- Functional characterization of neuropeptides that act as ligands for both calcitonin-type and pigment-dispersing factor-type receptors in a deuterostome
Cong X Liu H Liu L Castelán NE Jones KG Egertová M Elphick MR Chen M
Elife, Elife vol. 13
21-11-2025 - Bayesian Selection of Relaxed-clock Models: Distinguishing Between Independent and Autocorrelated Rates
Panchaksaram M Freitas L dos Reis M
Systematic Biology, Oxford University Press
21-11-2025 - Adenine DNA methylation associated with transcriptionally permissive chromatin is widespread across eukaryotes
Romero Charria P Navarrete C Ovchinnikov V Xu L Sarre LA Shabardina V Ksiezopolska E Casacuberta E et al.
Nature Genetics, Springer Nature, 1-11.
18-11-2025 - Chromatin profiling identifies putative dual roles for H3K27me3 in regulating cell type-specific genes and transposable elements in choanoflagellates
Gahan JM Helfrich LW Wetzel LA Bhanu NV Yuan Z-F Garcia BA Klose RJ de Mendoza A et al.
Nature Communications, Springer Nature vol. 16 (1)
29-10-2025 - Rapalink-1 reveals TOR-dependent genes and an agmatinergic axis-based metabolic feedback regulating TOR activity and lifespan in fission yeast.
Rallis C
Communications Biology, Nature Research vol. 8, 1364-1364.
29-09-2025 - Non-CG DNA methylation in animal genomes
Brethouwer T de Mendoza A Bogdanovic O
Nature Genetics, Springer Nature vol. 57 (10), 2395-2407.
11-09-2025 - The genomic origin of the unique chaetognath body plan
Piovani L Gavriouchkina D Parey E Sarre LA Peijnenburg KTCA Martín-Durán JM Rokhsar DS Satoh N et al.
Nature, Springer Nature vol. 645 (8082), 964-973.
13-08-2025 - Repressive Cytosine Methylation is a Marker of Viral Gene Transfer Across Divergent Eukaryotes
Sarre LA Peralta GAG Charria PR Ovchinnikov V de Mendoza A
Molecular Biology and Evolution, Oxford University Press (OUP) vol. 42 (8)
25-07-2025 - Epigenetic silencing and genome dynamics determine the fate of giant virus endogenizations in Acanthamoeba
Blais C Colp MJ Sarre LA de Mendoza A Archibald JM
Bmc Biology, Springer Nature vol. 23 (1)
01-07-2025 - Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic
Metheringham CL Plumb WJ Flynn WRM Stocks JJ Kelly LJ Nemesio Gorriz M Grieve SWD Moat J et al.
Science, American Association For The Advancement of Science (Aaas) vol. 388 (6754), 1422-1425.
26-06-2025 - Dissecting the cell cycle regulation, DNA damage sensitivity and lifespan effects of caffeine in fission yeast
Alao J-P Kumar J Stamataki D Rallis C
Microbial Cell, Shared Science Publishers Og vol. 12 (1)
24-06-2025 - Quantitative measurement of phenotype dynamics during cancer drug resistance evolution using genetic barcoding
Whiting FJH Mossner M Gabbutt C Kimberley C Barnes CP Baker A-M Yara-Romero E Sottoriva A et al.
Nature Communications, Springer Nature vol. 16 (1)
20-06-2025 - Population genomics of a sailing siphonophore reveals genetic structure in the open ocean
Church SH Abedon RB Ahuja N Anthony CJ Destanović D Ramirez DA Rojas LM Albinsson ME et al.
Current Biology, Elsevier vol. 35 (15), 3556-3569.e6.
19-06-2025 - Evolution of temperature preference behaviour among Drosophila larvae
Kafle T Grub M Sakagiannis P Nawrot MP Arguello JR
Iscience, Elsevier vol. 28 (7)
31-05-2025 - Biodiversity2Drugs—Renaissance of exploring nature‐derived peptides for GPCR ligand discovery
Gruber CW Beets I Boudreault P da S. Bolzani V Carlsson J Fernandes PA Freissmuth M Gilles N et al.
British Journal of Pharmacology, Wiley vol. 182 (16), 3691-3694.
29-05-2025 - Genome synteny reveals hidden enhancer conservation
de Mendoza A
Nature Genetics, Springer Nature vol. 57 (6), 1328-1329.
27-05-2025 - Chromatin loops are an ancestral hallmark of the animal regulatory genome
Kim IV Navarrete C Grau-Bové X Iglesias M Elek A Zolotarov G Bykov NS Montgomery SA et al.
Nature, Springer Nature vol. 642 (8069), 1097-1105.
07-05-2025 - Efficient Detection and Characterization of Targets of Natural Selection Using Transfer Learning
Arnab SP dos Santos ALC Fumagalli M DeGiorgio M
Molecular Biology and Evolution, Oxford University Press (OUP) vol. 42 (5)
30-04-2025 - Can genomic analysis actually estimate past population size?
Bansal JK Nichols RA
Trends in Genetics, Elsevier vol. 41 (7), 559-567.
25-04-2025 - Morpholino oligomer delivery via bath immersion for use in reverse genetic studies on the early development of eastern oysters (Crassostrea virginica)
Xu L Small JM Hood SM Zhao M Plough LV Wong T-T
Aquaculture, Elsevier vol. 600
01-04-2025 - Cannabinoid receptors in GtoPdb v.2025.1
Abood M Felder CC Greasley P Herkenham M Howlett AC Kunos G Mackie K Mechoulam R et al.
Iuphar/Bps Guide to Pharmacology Cite, University of Edinburgh vol. 2025 (1)
01-04-2025 - Receptor deorphanization in starfish reveals the evolution of relaxin signaling as a regulator of reproduction
Feng Y Escudero Castelan N Hossain MA Wu H Katayama H Smith S Cummins S Mita M et al.
Bmc Biology, Biomed Central
25-02-2025 - Discovery and functional characterization of a bombesin-type neuropeptide signaling system in an invertebrate
Huang W ZHONG X Zampronio C Bottrill A Jones K Tinoco A Guo L Egertová M et al.
Proceedings of The National Academy of Sciences, National Academy of Sciences
19-02-2025 - Defensive Symbiont Genotype Distributions Are Linked to Parasitoid Attack Networks
Wu T Rodrigues AA Fayle TM Henry LM
Ecology Letters, Wiley vol. 28 (2)
01-02-2025