Dr Alexandre De Mendoza Soler

Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, Sansom RS, Feuda R, Fleming JF, Sugahara F, Cummins C, et al. (2024). Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution, Springer Nature, 1-17.  
12-01-2024

Buckberry S, Liu X, Poppe D, Tan JP, Sun G, Chen J, Nguyen TV, de Mendoza A, Pflueger J, Frazer T, Vargas-Landín DB, Paynter JM, Smits N, Liu N, Ouyang JF, Rossello FJ, Chy HS, Rackham OJL, Laslett AL, Breen J, et al. (2023). Transient naive reprogramming corrects hiPS cells functionally and epigenetically. Nature, Springer Nature vol. 620 (7975), 863-872.  
16-08-2023

de Mendoza A (2023). A mammalian DNA methylation landscape. Science, American Association for the Advancement of Science vol. 381 (6658), 602-603.  
11-08-2023

de Mendoza A, Nguyen TV, Ford E, Poppe D, Buckberry S, Pflueger J, Grimmer MR, Stolzenburg S, Bogdanovic O, Oshlack A, Farnham PJ, Blancafort P and Lister R (2022). Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biology, BMC vol. 23 (1) 
26-07-2022

De Mendoza Soler A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, de la Calle-Mustiennes E, Gomez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, Venkatesh B, Bogdanovic O and Lister R (2021). The emergence of the brain non-CpG methylation system in vertebrates., Editors: Domingues V. Nature Ecology and Evolution, Nature Research 
18-01-2021

Ross SE, Angeloni A, Geng F-S, de Mendoza A and Bogdanovic O (2020). Developmental remodelling of non-CG methylation at satellite DNA repeats. Nucleic Acids Research, Oxford University Press (OUP) vol. 48 (22) 
04-12-2020

Ruiz-Trillo I and de Mendoza A (2020). Towards understanding the origin of animal development. Development (Cambridge, England) vol. 147 (23) 
03-12-2020

Ross SE, Angeloni A, de Mendoza A and Bogdanovic O (2020). Pervasive non-CpG methylation at zebrafish mosaic satellite repeats. 
14-05-2020

de Mendoza A, Lister R and Bogdanovic O (2019). Evolution of DNA Methylome Diversity in Eukaryotes. Journal of Molecular Biology, Elsevier vol. 432 (6), 1687-1705.  
11-11-2019

de Mendoza A and Sebé-Pedrós A (2019). Origin and evolution of eukaryotic transcription factors. Current Opinion in Genetics and Development, Elsevier vol. 58-59, 25-32.  
01-10-2019

de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U, Hejnol A, Adamska M, Degnan BM, Degnan SM and Lister R (2019). Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature Ecology and Evolution, Nature Research vol. 3 (10), 1464-1473.  
26-09-2019

De Mendoza A, Pflueger J and Lister R (2019). Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family. Genome Research, Cold Spring Harbor Laboratory Press vol. 29 (8), 1277-1286.  
25-06-2019

De Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Hong F, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S and Lister R (2018). Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications, Nature Research (part of Springer Nature) vol. 9 (1) 
01-12-2018

de Mendoza A, Suga H, Permanyer J, Irimia M and Ruiz-Trillo I (2015). Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals. eLife, eLife vol. 4 
01-01-2015

de Mendoza A, Sebé-Pedrós A and Ruiz-Trillo I (2014). The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity. Genome Biology and Evolution, Oxford University Press (OUP) vol. 6 (3), 606-619.  
23-02-2014

de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejčić M, Torruella G, Domazet-Lošo T and Ruiz-Trillo I (2013). Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages. Proceedings of the National Academy of Sciences of the United States of America, Proceedings of the National Academy of Sciences vol. 110 (50), e4858-e4866.  
25-11-2013

Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, Haas BJ, Roger AJ, Nusbaum C and Ruiz-Trillo I (2013). The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications, Springer Nature vol. 4 (1) 
01-01-2013