Dr Alexandre De Mendoza Soler
School of Biological and Behavioural Sciences
Queen Mary University of London
Queen Mary University of London
Publications of specific relevance to the Centre for Evolutionary and Functional Genomics
2024
Yu D, Ren Y, Uesaka M, Beavan AJS, Muffato M, Shen J, Li Y, Sato I, Wan W, Clark JW, Keating JN, Carlisle EM, Dearden RP, Giles S, Randle E, Sansom RS, Feuda R, Fleming JF, Sugahara F, Cummins C, et al. (2024). Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences. Nature Ecology & Evolution, Springer Nature, 1-17.
12-01-2024
12-01-2024
2023
Buckberry S, Liu X, Poppe D, Tan JP, Sun G, Chen J, Nguyen TV, de Mendoza A, Pflueger J, Frazer T, Vargas-Landín DB, Paynter JM, Smits N, Liu N, Ouyang JF, Rossello FJ, Chy HS, Rackham OJL, Laslett AL, Breen J, et al. (2023). Transient naive reprogramming corrects hiPS cells functionally and epigenetically. Nature, Springer Nature vol. 620 (7975), 863-872.
16-08-2023
16-08-2023
de Mendoza A (2023). A mammalian DNA methylation landscape. Science, American Association for the Advancement of Science vol. 381 (6658), 602-603.
11-08-2023
11-08-2023
2022
de Mendoza A, Nguyen TV, Ford E, Poppe D, Buckberry S, Pflueger J, Grimmer MR, Stolzenburg S, Bogdanovic O, Oshlack A, Farnham PJ, Blancafort P and Lister R (2022). Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biology, BMC vol. 23 (1)
26-07-2022
26-07-2022
2021
De Mendoza Soler A, Poppe D, Buckberry S, Pflueger J, Albertin CB, Daish T, Bertrand S, de la Calle-Mustiennes E, Gomez-Skarmeta JL, Nery JR, Ecker JR, Baer B, Ragsdale CW, Grützner F, Escriva H, Venkatesh B, Bogdanovic O and Lister R (2021). The emergence of the brain non-CpG methylation system in vertebrates., Editors: Domingues V. Nature Ecology and Evolution, Nature Research
18-01-2021
18-01-2021
2020
Ross SE, Angeloni A, Geng F-S, de Mendoza A and Bogdanovic O (2020). Developmental remodelling of non-CG methylation at satellite DNA repeats. Nucleic Acids Research, Oxford University Press (OUP) vol. 48 (22)
04-12-2020
04-12-2020
Ruiz-Trillo I and de Mendoza A (2020). Towards understanding the origin of animal development. Development (Cambridge, England) vol. 147 (23)
03-12-2020
03-12-2020
Ross SE, Angeloni A, de Mendoza A and Bogdanovic O (2020). Pervasive non-CpG methylation at zebrafish mosaic satellite repeats.
14-05-2020
14-05-2020
2019
de Mendoza A, Lister R and Bogdanovic O (2019). Evolution of DNA Methylome Diversity in Eukaryotes. Journal of Molecular Biology, Elsevier vol. 432 (6), 1687-1705.
11-11-2019
11-11-2019
de Mendoza A and Sebé-Pedrós A (2019). Origin and evolution of eukaryotic transcription factors. Current Opinion in Genetics and Development, Elsevier vol. 58-59, 25-32.
01-10-2019
01-10-2019
de Mendoza A, Hatleberg WL, Pang K, Leininger S, Bogdanovic O, Pflueger J, Buckberry S, Technau U, Hejnol A, Adamska M, Degnan BM, Degnan SM and Lister R (2019). Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature Ecology and Evolution, Nature Research vol. 3 (10), 1464-1473.
26-09-2019
26-09-2019
De Mendoza A, Pflueger J and Lister R (2019). Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family. Genome Research, Cold Spring Harbor Laboratory Press vol. 29 (8), 1277-1286.
25-06-2019
25-06-2019
2018
De Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Hong F, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S and Lister R (2018). Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications, Nature Research (part of Springer Nature) vol. 9 (1)
01-12-2018
01-12-2018
2015
de Mendoza A, Suga H, Permanyer J, Irimia M and Ruiz-Trillo I (2015). Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals. eLife, eLife vol. 4
01-01-2015
01-01-2015
2014
de Mendoza A, Sebé-Pedrós A and Ruiz-Trillo I (2014). The Evolution of the GPCR Signaling System in Eukaryotes: Modularity, Conservation, and the Transition to Metazoan Multicellularity. Genome Biology and Evolution, Oxford University Press (OUP) vol. 6 (3), 606-619.
23-02-2014
23-02-2014
2013
de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejčić M, Torruella G, Domazet-Lošo T and Ruiz-Trillo I (2013). Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages. Proceedings of the National Academy of Sciences of the United States of America, Proceedings of the National Academy of Sciences vol. 110 (50), e4858-e4866.
25-11-2013
25-11-2013
Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, Haas BJ, Roger AJ, Nusbaum C and Ruiz-Trillo I (2013). The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications, Springer Nature vol. 4 (1)
01-01-2013
01-01-2013
Grants of specific relevance to the Centre for Evolutionary and Functional Genomics
Deciphering the evolution of cytosine DNA methylation across eukaryotes through experimental and epi - ERC StG 2020 Alex de Mendoza
Alexandre De Mendoza Soler
£1,213,073 EU Commission - Horizon 2020 (01-09-2021 - 31-08-2026)
Alexandre De Mendoza Soler
£1,213,073 EU Commission - Horizon 2020 (01-09-2021 - 31-08-2026)
A confocal microscope for multidisciplinary dynamic studies of complex biological systems
Conrad Mullineaux, Caroline Brennan, Alexandre De Mendoza Soler, Viji Draviam Sastry, Maurice Elphick, Christoph Engl, Maria Isabel Palacios De Castro, Matteo Palma, Marina Resmini, Alexander Ruban, Peter Thorpe, Angelika Stollewerk, Jose Martin Duran, Paulo Baptista Ribeiro, Susana Alves Godinho, Richard Grose, Stephanie Kermorgant, Peter McCormick and Tyson Sharp
£390,834 BBSRC Biotechnology and Biological Sciences Research Council (01-08-2022 - 31-07-2023)
Conrad Mullineaux, Caroline Brennan, Alexandre De Mendoza Soler, Viji Draviam Sastry, Maurice Elphick, Christoph Engl, Maria Isabel Palacios De Castro, Matteo Palma, Marina Resmini, Alexander Ruban, Peter Thorpe, Angelika Stollewerk, Jose Martin Duran, Paulo Baptista Ribeiro, Susana Alves Godinho, Richard Grose, Stephanie Kermorgant, Peter McCormick and Tyson Sharp
£390,834 BBSRC Biotechnology and Biological Sciences Research Council (01-08-2022 - 31-07-2023)